Synthetic Biology:Tools

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===General Tools===
===General Tools===
* [http://parts.mit.edu/ Registry of Standard Biological Parts]
* [http://parts.mit.edu/ Registry of Standard Biological Parts]
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*[http://genolist.pasteur.fr/Colibri/ Colibri]
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*[http://genolist.pasteur.fr/Colibri/ Colibri] ''E. coli'' genome site; get sequences, see the position of your gene in the chromosome, see the function of your gene, and other fun stuff
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*E. coli genome site; get sequences, see the position of your gene in the chromosome, and other fun stuff
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Revision as of 20:27, 17 September 2005

Via this page, we hope to maintain a collection of links to online tools that are related to Synthetic Biology

Contents

DNA Tools

  • Vector NTI by Informax, Inc.
    • Free-to-academics Windows-only tool for sequence analysis and data management.
  • Biopolymer calculator by Schepartz lab
    • Calculate extinction coefficients, Tm's, and base composition for your DNA or RNA; calculate amino acid composition and extinction coefficient for your protein

RNA Tools

  • mFold by Michael Zuker. This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies.

Protein Tools

General Tools

Personal tools