Synthetic Biology:Semantic web ontology/Software: Difference between revisions

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*[http://www.cgi-interactive-uk.com/mysql_dmoz_rdf_parser.html MySQL Dmoz RDF Parser] - This Perl script converts the Dmoz content.rdf file from the RDF format into a text file which can be easily loaded into MySQL.
*[http://www.cgi-interactive-uk.com/mysql_dmoz_rdf_parser.html MySQL Dmoz RDF Parser] - This Perl script converts the Dmoz content.rdf file from the RDF format into a text file which can be easily loaded into MySQL.
*[http://activerdf.org/ ActiveRDF] is a library for accessing RDF data from Ruby programs.
*[http://activerdf.org/ ActiveRDF] is a library for accessing RDF data from Ruby programs.
*[http://www.dfki.uni-kl.de/~grimnes/2006/03/RDFRoom/ RDFRoom] is an isometric RDF viewer. It gives the user ways to view and manipulate his RDF data that might make him see the data in a brand new perspective.


==RDF Schema==
==RDF Schema==

Revision as of 00:05, 28 April 2006

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RDF

  • Developers Guide to Semantic Web Toolkits for different Programming Languages
  • Jena - a Java framework for building Semantic Web applications. It provides a programmatic environment for RDF, RDFS and OWL, including a rule-based inference engine.
  • 4Suite™: an open-source platform for XML and RDF processing
  • Sesame: an open source RDF database with support for RDF Schema inferencing and querying
  • kowari|metastore: database for the storage, retrieval and analysis of RDF and OWL metadata
  • ARC RDF Store is a SPARQL-enabled RDF storage system optimized for shared, hosted (or otherwise performance-limited) Web environments.
  • Redland RDF Application Framework (Redland RPMs)
  • RDF Validator
  • Wilbur Nokia RDF toolkit
  • ARP: Another RDF Parser (Jena RDF/XML Parser, from Jeremy Carroll @ HP)
  • Oracle Semantic Technologies - links to the white papers at the bottom of the page
  • MySQL Dmoz RDF Parser - This Perl script converts the Dmoz content.rdf file from the RDF format into a text file which can be easily loaded into MySQL.
  • ActiveRDF is a library for accessing RDF data from Ruby programs.
  • RDFRoom is an isometric RDF viewer. It gives the user ways to view and manipulate his RDF data that might make him see the data in a brand new perspective.

RDF Schema

Ontology editors

  • List of ontology editors
  • Ontology tools survey @ xml.com from 2004
  • Protégé is a free, open source ontology editor and knowledge-base framework
  • Protégé OWL Plugin - ontology editor for the Semantic Web
  • OilEd is an ontology editor allowing the user to build ontologies using DAML+OIL
  • Ontolingua
  • Chimaera is a software system that supports users in creating and maintaining distributed ontologies on the web
  • SWOOP A Hypermedia-based Featherweight OWL Ontology Editor
  • Altova SemanticWorks - visual RDF and OWL editor that autogenerates RDF/XML and N-Triples
  • CmapTools Ontology Editor - concept maps provide a human-centered interface to display the structure, content, and scope of an ontology
  • SweDE is built on the Eclipse IDE, includes an OWL editor with helpful features like syntax highlighting, autocompletion, and error-detection. It also currently integrates existing tools like the OWL Validator, Kazuki (OWL to Java code generator), and DumpOnt (Ontology Visualizer).
  • m3t4.studio Semantic Toolkit - RDF and OWL editors for the Eclipse IDE.

Query

Rule engines

  • CWM - Closed World Machine
  • Pychinko: Rete-based RDF friendly rule engine

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