Synthetic Biology:Semantic web ontology/Software: Difference between revisions
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**[http://groups.yahoo.com/group/jena-dev/ jena-dev] - Jena developers mailing list archive | **[http://groups.yahoo.com/group/jena-dev/ jena-dev] - Jena developers mailing list archive | ||
**[http://www.nexist.org/Jena2Manager/index.html Jena2 Manager] | **[http://www.nexist.org/Jena2Manager/index.html Jena2 Manager] | ||
*[http://4suite.org/ 4Suite™]: an open-source platform for XML and RDF processing | *[http://4suite.org/ 4Suite™]: an open-source platform for XML and RDF processing | ||
*[http://www.openrdf.org/ Sesame]: an open source RDF database with support for RDF Schema inferencing and querying | *[http://www.openrdf.org/ Sesame]: an open source RDF database with support for RDF Schema inferencing and querying | ||
*[http://kowari.org/ kowari|metastore]: database for the storage, retrieval and analysis of RDF and OWL metadata | *[http://kowari.org/ kowari|metastore]: database for the storage, retrieval and analysis of RDF and OWL metadata | ||
*[http://www.appmosphere.com/pages/en-arc_rdf_store ARC RDF Store] is a SPARQL-enabled RDF storage system optimized for shared, hosted (or otherwise performance-limited) Web environments. | |||
*[http://librdf.org/ Redland] RDF Application Framework ([http://download.librdf.org/binaries/ Redland RPMs]) | *[http://librdf.org/ Redland] RDF Application Framework ([http://download.librdf.org/binaries/ Redland RPMs]) | ||
*[http://www.w3.org/RDF/Validator RDF Validator] | |||
*[http://opensource.nokia.com/projects/wilbur/index.html Wilbur] Nokia RDF toolkit | *[http://opensource.nokia.com/projects/wilbur/index.html Wilbur] Nokia RDF toolkit | ||
*[http://www.hpl.hp.com/personal/jjc/arp/ ARP]: Another RDF Parser (Jena RDF/XML Parser, from Jeremy Carroll @ HP) | *[http://www.hpl.hp.com/personal/jjc/arp/ ARP]: Another RDF Parser (Jena RDF/XML Parser, from Jeremy Carroll @ HP) |
Revision as of 23:08, 27 April 2006
RDF
- Jena - a Java framework for building Semantic Web applications. It provides a programmatic environment for RDF, RDFS and OWL, including a rule-based inference engine.
- jena-dev - Jena developers mailing list archive
- Jena2 Manager
- 4Suite™: an open-source platform for XML and RDF processing
- Sesame: an open source RDF database with support for RDF Schema inferencing and querying
- kowari|metastore: database for the storage, retrieval and analysis of RDF and OWL metadata
- ARC RDF Store is a SPARQL-enabled RDF storage system optimized for shared, hosted (or otherwise performance-limited) Web environments.
- Redland RDF Application Framework (Redland RPMs)
- RDF Validator
- Wilbur Nokia RDF toolkit
- ARP: Another RDF Parser (Jena RDF/XML Parser, from Jeremy Carroll @ HP)
- Oracle Semantic Technologies - links to the white papers at the bottom of the page
- RDF data model in Oracle - white paper decribing DB schema for RDF statements storage
- MySQL Dmoz RDF Parser - This Perl script converts the Dmoz content.rdf file from the RDF format into a text file which can be easily loaded into MySQL.
RDF Schema
- RDF Schema formatter - extracts human readable information from a RDF Schema
Ontology editors
- List of ontology editors
- Ontology tools survey @ xml.com from 2004
- Protégé is a free, open source ontology editor and knowledge-base framework
- Protégé OWL Plugin - ontology editor for the Semantic Web
- OilEd is an ontology editor allowing the user to build ontologies using DAML+OIL
- Ontolingua
- Chimaera is a software system that supports users in creating and maintaining distributed ontologies on the web
- SWOOP A Hypermedia-based Featherweight OWL Ontology Editor
- Altova SemanticWorks - visual RDF and OWL editor that autogenerates RDF/XML and N-Triples
- CmapTools Ontology Editor - concept maps provide a human-centered interface to display the structure, content, and scope of an ontology
- SweDE is built on the Eclipse IDE, includes an OWL editor with helpful features like syntax highlighting, autocompletion, and error-detection. It also currently integrates existing tools like the OWL Validator, Kazuki (OWL to Java code generator), and DumpOnt (Ontology Visualizer).
- m3t4.studio Semantic Toolkit - RDF and OWL editors for the Eclipse IDE.
Query
- SPARQL engine
- sparql2sql - a query engine for SPARQL over Jena triple stores
Rule engines
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