Sriram Kosuri - Revision history

Skosuri at 22:46, 30 November 2012

Skosuri — Fri, 30 Nov 2012 22:46:43 GMT

←Older revision		Revision as of 22:46, 30 November 2012
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	</a>		</a>
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	[[Category:Steering Committee member]]		[[Category:Steering Committee member]]
	[[Category:People at MIT]]		[[Category:People at MIT]]

Skosuri at 18:20, 18 August 2012

Skosuri — Sat, 18 Aug 2012 18:20:49 GMT

←Older revision		Revision as of 18:20, 18 August 2012
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	==Science==		==Science==
	===Publications===		===Publications===
		+
		+	'''Next-Generation Digital Information Storage in DNA'''<br>
		+	George M. Church, Yuan Gao, [[Sriram Kosuri]]<br>
		+	''Science'' (2012) [http://dx.doi.org/10.1126/science.1226355 doi:10.1126/science.1226355]

	'''When It Rains, It Pores'''<br>		'''When It Rains, It Pores'''<br>

Skosuri at 16:07, 15 August 2012

Skosuri — Wed, 15 Aug 2012 16:07:48 GMT

←Older revision		Revision as of 16:07, 15 August 2012
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	[[Image:Sri Kosuri.jpg\|thumb\|right\|Sri at work]]		[[Image:Sri Kosuri.jpg\|thumb\|right\|Sri at work]]
	===Bio===		===Bio===
-	I am curently a ~~Staff Scientist in~~ the [http://wyss.harvard.edu/viewpage/~~101~~/~~synthetic~~-~~biology Synthetic Biology Platform~~] at the [http://wyss.harvard.edu/ ~~Wyss Institute~~] ~~as a member of~~ the [http://wyss.harvard.edu/~~viewpage/72/advanced-technology-team Advanced Technology Team~~]. I was a postdoc in [[User:Geochurch\|George Church]]'s [[Church Lab\|lab]] in ~~the Department of Genetics at Harvard Medical School and~~ the [http://~~wyss~~.harvard.edu/ Wyss Institute] from 2009-2011. From 2007-2009, I ~~worked at~~ a ~~small Cambridge-area~~ startup called [http://jouleunlimited.com/ Joule Unlimited]. I ~~am also on the Board of Directors for OpenWetWare. I previously did a short postdoctoral stint~~ in [http://~~laublab~~.mit.edu/ ~~Mike Laub's lab~~] ~~working on cell cycle in ''Caulobacter crescentus''. Prior to the Laub lab, I was a graduate student~~ in [[Drew Endy]]'s lab and worked on understanding the development of a simple virus (T7) that infects ''E. coli''. As an undergraduate at [http://~~www~~.berkeley.edu UC Berkeley], I worked with [http://www.lbl.gov/~aparkin Adam Arkin], Dale Kaiser, and Roy Welch on modeling traveling wave formation in ''M. xanthus''.	+	I am curently a member of the [http://wyss.harvard.edu/viewpage/72/advanced-technology-team Advanced Technology Team] in the [http://wyss.harvard.edu/viewpage/101/synthetic-biology Synthetic Biology Platform] at the [http://wyss.harvard.edu/ Wyss Institute]. I was a postdoc in [[User:Geochurch\|George Church]]'s [[Church Lab\|lab]] in the [http://genetics.med.harvard.edu/ Department of Genetics] at Harvard Medical School and the Wyss Institute from 2009-2011. From 2007-2009, I was the first employee of a biofuel startup called [http://jouleunlimited.com/ Joule Unlimited]. I got my ScD in [http://web.mit.edu/be/index.shtml Biological Engineering] at MIT in [[Drew Endy]]'s lab and worked on understanding the development of a simple virus (T7) that infects ''E. coli''. As an undergraduate in [http://bioeng.berkeley.edu/ Bioengineering] at UC Berkeley, I worked with [http://www.lbl.gov/~aparkin Adam Arkin], Dale Kaiser, and Roy Welch on modeling traveling wave formation in ''M. xanthus''. I also co-founded OpenWetWare.

	==Science==		==Science==
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	[http://hdl.handle.net/1721.1/27501 October 2004 version]		[http://hdl.handle.net/1721.1/27501 October 2004 version]

-	~~===Interests===~~
-
-	*Developing technologies on making biology easier to engineer.
-
-	*Enabling the design, construction, and use of biological organisms for the purposes of further scientific understanding; keeping extremely aware of the use of engineered biological organisms for other purposes.
-
-	*Understanding those aspects of biological design that allow for certain robust features of development in the face of large intrinsic and extrinsic variation specifically on non-evolutionary time-scales (I am currently giving up on the past. That may change in the future.).
-
-	*Property rights as related to biological information and organisms; understanding and reforming current and future frameworks; I really like these [http://sciencecommons.org people]
-
-	*OpenWetWare of course!
-
-	~~=== Past Projects ===~~
-
-	~~[[Rebuilding T7]]~~
-
-	~~[[TABASCO]] -- A single molecule base-pair resolved gene expression simulator~~
-
-	~~Measure and Models of T7 Infection~~
-
-	~~[[How does T7 deal with Uncertainty]]~~
-
-	~~[[User:Skosuri/T7.2 tests\|T7.2 Tests]]~~
-
-
-	~~===Interesting Stuff===~~
-	~~The beginnings of a [[/blog\|blog]].~~
-
-	~~See my [[Sriram Kosuri/Interesting Stuff\|interesting stuff page]]~~
-
-	~~[[Sriram Kosuri/Post-doctoral Fellowships\|Post-doctoral Fellowships]]~~
-
-	~~[[Media:CGR Research Plan.pdf\|A failed Research Plan for a job at Harvard's CGR]]~~
-
-	~~[http://hdl.handle.net/1721.1/35864 My Thesis!]~~
-
-	~~[[Special:Contributions/Skosuri\|My contributions to OWW]]~~
-
-	~~[[Sriram Kosuri/temp]]~~

	==Contact==		==Contact==
-	'''Phone''': ~~still waiting~~<br>	+	'''Phone''': 617-432-8283<br>
	'''OWW users''': Post a message on my [[User talk:Skosuri\|talk page]], or send me an [[Special:Emailuser/Skosuri\|email]].<br>		'''OWW users''': Post a message on my [[User talk:Skosuri\|talk page]], or send me an [[Special:Emailuser/Skosuri\|email]].<br>
	'''Email''': [[Image:Sri Kosuri's Email.jpg\|500px]]<br>		'''Email''': [[Image:Sri Kosuri's Email.jpg\|500px]]<br>
	'''Postal''':<br>		'''Postal''':<br>
-	~~Harvard Medical School~~<br>	+	Wyss Institute<br>
-	~~Genetics Department~~<br>	+	CLSB 508-7<br>
-	~~New Research Building (NRB) Rooms 232 <br>~~	+	3 Blackfan Circle<br>
-	~~77 Ave. Louis Pasteur~~<br>	+
	Boston, MA 02115 USA <br>		Boston, MA 02115 USA <br>

Skosuri at 12:38, 20 July 2012

Skosuri — Fri, 20 Jul 2012 12:38:54 GMT

←Older revision		Revision as of 12:38, 20 July 2012
Line 2:		Line 2:
	[[Image:Sri Kosuri.jpg\|thumb\|right\|Sri at work]]		[[Image:Sri Kosuri.jpg\|thumb\|right\|Sri at work]]
	===Bio===		===Bio===
-	I am curently a postdoc in [[User:Geochurch\|George Church]]'s [[Church Lab\|lab]] in the Department of Genetics at Harvard Medical School and the [http://wyss.harvard.edu/ Wyss Institute]. From ~~September~~ 2007 ~~to February~~ 2009, I worked at a small Cambridge-area startup called [http://jouleunlimited.com/ Joule Unlimited]. I am also on the Board of Directors for OpenWetWare. I previously did a short postdoctoral stint in [http://laublab.mit.edu/ Mike Laub's lab] working on cell cycle in ''Caulobacter crescentus''. Prior to the Laub lab, I was a graduate student in [[Drew Endy]]'s lab and worked on understanding the development of a simple virus (T7) that infects ''E. coli''. As an undergraduate at [http://www.berkeley.edu UC Berkeley], I worked with [http://www.lbl.gov/~aparkin Adam Arkin], Dale Kaiser, and Roy Welch on modeling traveling wave formation in ''M. xanthus''.	+	I am curently a Staff Scientist in the [http://wyss.harvard.edu/viewpage/101/synthetic-biology Synthetic Biology Platform] at the [http://wyss.harvard.edu/ Wyss Institute] as a member of the [http://wyss.harvard.edu/viewpage/72/advanced-technology-team Advanced Technology Team]. I was a postdoc in [[User:Geochurch\|George Church]]'s [[Church Lab\|lab]] in the Department of Genetics at Harvard Medical School and the [http://wyss.harvard.edu/ Wyss Institute] from 2009-2011. From 2007-2009, I worked at a small Cambridge-area startup called [http://jouleunlimited.com/ Joule Unlimited]. I am also on the Board of Directors for OpenWetWare. I previously did a short postdoctoral stint in [http://laublab.mit.edu/ Mike Laub's lab] working on cell cycle in ''Caulobacter crescentus''. Prior to the Laub lab, I was a graduate student in [[Drew Endy]]'s lab and worked on understanding the development of a simple virus (T7) that infects ''E. coli''. As an undergraduate at [http://www.berkeley.edu UC Berkeley], I worked with [http://www.lbl.gov/~aparkin Adam Arkin], Dale Kaiser, and Roy Welch on modeling traveling wave formation in ''M. xanthus''.

	==Science==		==Science==

Skosuri at 14:27, 20 April 2012

Skosuri — Fri, 20 Apr 2012 14:27:25 GMT

←Older revision		Revision as of 14:27, 20 April 2012
Line 6:		Line 6:
	==Science==		==Science==
	===Publications===		===Publications===
		+
		+	'''When It Rains, It Pores'''<br>
		+	[[Sriram Kosuri]] & A. Michael Sismour<br>
		+	''ACS Synthetic Biology'' (2012) [http://dx.doi.org/10.1021/sb300015f doi:10.1021/sb300015f]
		+
		+	'''Gene Assembly from Chip-Synthesized Oligonucleotides'''<br>
		+	[[User:Nikolai_Eroshenko\|Nikolai Eroshenko]], [[Sriram Kosuri]], Adam H Marblestone, Nicholas Conway, & [[George_Church\|George Church]]<br>
		+	''Current Protocols in Chemical Biology'' (2012) [http://dx.doi.org/10.1002/9780470559277.ch110190 doi:10.1002/9780470559277.ch110190]
		+
	'''Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription'''<br>		'''Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription'''<br>
-	Feng Zhang, Le Cong, Simona Lodato, [[Sriram Kosuri]], [[George_Church\|George Church]] & Paola Arlotta <br>	+	Feng Zhang, Le Cong, Simona Lodato, [[Sriram Kosuri]], [[George_Church\|George Church]] & Paola Arlotta <br>
-	''Nature Biotechnology (2011) [http://dx.doi.org/10.1038/nbt.1775 doi:10.1038/nbt.1775]	+	''Nature Biotechnology'' (2011) [http://dx.doi.org/10.1038/nbt.1775 doi:10.1038/nbt.1775]

	'''Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips'''<br>		'''Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips'''<br>
-	[[Sriram Kosuri]], [[User:Nikolai_Eroshenko\|Nikolai Eroshenko]], Emily LeProust, Michael Super, Jeffrey Way, Jin Billy Li & [[George_Church\|George Church]]<br>	+	[[Sriram Kosuri]], [[User:Nikolai_Eroshenko\|Nikolai Eroshenko]], Emily LeProust, Michael Super, Jeffrey Way, Jin Billy Li & [[George_Church\|George Church]]<br>
	''Nature Biotechnology'' (2010) '''28''':1295 [http://dx.doi.org/10.1038/nbt.1716 doi:10.1038/nbt.1716]		''Nature Biotechnology'' (2010) '''28''':1295 [http://dx.doi.org/10.1038/nbt.1716 doi:10.1038/nbt.1716]
	[http://dx.doi.org/10.1038/nbt.1723 News & Views], [http://www.nature.com/nbt/journal/v28/n12/covers/index.html Cover Art]		[http://dx.doi.org/10.1038/nbt.1723 News & Views], [http://www.nature.com/nbt/journal/v28/n12/covers/index.html Cover Art]
Line 21:		Line 30:

	'''Refactoring bacteriophage T7'''<br>		'''Refactoring bacteriophage T7'''<br>
-	[[Leon Chan\|Leon Y. Chan]], [[Sriram Kosuri]] and [[Drew Endy]]<br>	+	[[Leon Chan\|Leon Y. Chan]], [[Sriram Kosuri]] and [[Drew Endy]]<br>
	''Molecular Systems Biology'' 13 September 2005 DOI:10.1038/msb4100025<br>		''Molecular Systems Biology'' 13 September 2005 DOI:10.1038/msb4100025<br>
	[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html URL]		[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html URL]

Skosuri at 17:57, 4 April 2011

Skosuri — Mon, 04 Apr 2011 17:57:27 GMT

←Older revision		Revision as of 17:57, 4 April 2011
Line 2:		Line 2:
	[[Image:Sri Kosuri.jpg\|thumb\|right\|Sri at work]]		[[Image:Sri Kosuri.jpg\|thumb\|right\|Sri at work]]
	===Bio===		===Bio===
-	I am curently a postdoc in [[User:Geochurch\|George Church]]'s [[Church Lab\|lab]] in the Department of Genetics at Harvard Medical School and the [http://wyss.harvard.edu/ Wyss Institute]. From September 2007 to February 2009, I worked at a small Cambridge-area startup called [http://~~joulebio~~.com/ Joule ~~Biotechnologies~~]. I am also on the Board of Directors for OpenWetWare. I previously did a short postdoctoral stint in [http://laublab.mit.edu/ Mike Laub's lab] working on cell cycle in ''Caulobacter crescentus''. Prior to the Laub lab, I was a graduate student in [[Drew Endy]]'s lab and worked on understanding the development of a simple virus (T7) that infects ''E. coli''. As an undergraduate at [http://www.berkeley.edu UC Berkeley], I worked with [http://www.lbl.gov/~aparkin Adam Arkin], Dale Kaiser, and Roy Welch on modeling traveling wave formation in ''M. xanthus''.	+	I am curently a postdoc in [[User:Geochurch\|George Church]]'s [[Church Lab\|lab]] in the Department of Genetics at Harvard Medical School and the [http://wyss.harvard.edu/ Wyss Institute]. From September 2007 to February 2009, I worked at a small Cambridge-area startup called [http://jouleunlimited.com/ Joule Unlimited]. I am also on the Board of Directors for OpenWetWare. I previously did a short postdoctoral stint in [http://laublab.mit.edu/ Mike Laub's lab] working on cell cycle in ''Caulobacter crescentus''. Prior to the Laub lab, I was a graduate student in [[Drew Endy]]'s lab and worked on understanding the development of a simple virus (T7) that infects ''E. coli''. As an undergraduate at [http://www.berkeley.edu UC Berkeley], I worked with [http://www.lbl.gov/~aparkin Adam Arkin], Dale Kaiser, and Roy Welch on modeling traveling wave formation in ''M. xanthus''.

	==Science==		==Science==

Skosuri at 18:36, 20 January 2011

Skosuri — Thu, 20 Jan 2011 18:36:26 GMT

←Older revision		Revision as of 18:36, 20 January 2011
Line 5:		Line 5:

	==Science==		==Science==
		+	===Publications===
		+	'''Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription'''<br>
		+	Feng Zhang, Le Cong, Simona Lodato, [[Sriram Kosuri]], [[George_Church\|George Church]] & Paola Arlotta <br>
		+	''Nature Biotechnology (2011) [http://dx.doi.org/10.1038/nbt.1775 doi:10.1038/nbt.1775]
		+
		+	'''Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips'''<br>
		+	[[Sriram Kosuri]], [[User:Nikolai_Eroshenko\|Nikolai Eroshenko]], Emily LeProust, Michael Super, Jeffrey Way, Jin Billy Li & [[George_Church\|George Church]]<br>
		+	''Nature Biotechnology'' (2010) '''28''':1295 [http://dx.doi.org/10.1038/nbt.1716 doi:10.1038/nbt.1716]
		+	[http://dx.doi.org/10.1038/nbt.1723 News & Views], [http://www.nature.com/nbt/journal/v28/n12/covers/index.html Cover Art]
		+
		+	'''TABASCO: A single molecule, base-pair resolved gene expression simulator'''<br>
		+	[[Sriram Kosuri]], [[Jason Kelly]] and [[Drew Endy]]<br>
		+	''BMC Bioinformatics 2007'', '''8''':480 doi:10.1186/1471-2105-8-480<br>
		+	[http://www.biomedcentral.com/1471-2105/8/480 URL]<br>
		+
		+	'''Refactoring bacteriophage T7'''<br>
		+	[[Leon Chan\|Leon Y. Chan]], [[Sriram Kosuri]] and [[Drew Endy]]<br>
		+	''Molecular Systems Biology'' 13 September 2005 DOI:10.1038/msb4100025<br>
		+	[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html URL]
		+	[http://openwetware.mit.edu/images/e/ef/Msb4100025.pdf PDF reprint]
		+	[http://www.nature.com/msb/journal/v1/n1/full/msb4100028.html News & Views]
		+	[http://hdl.handle.net/1721.1/27501 October 2004 version]
		+
	===Interests===		===Interests===

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	[[User:Skosuri/T7.2 tests\|T7.2 Tests]]		[[User:Skosuri/T7.2 tests\|T7.2 Tests]]

-	~~===Publications===~~
-	~~'''Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription'''<br>~~
-	~~Feng Zhang, Le Cong, Simona Lodato, [[Sriram Kosuri]], [[George_Church\|George Church]] & Paola Arlotta <br>~~
-	~~''Nature Biotechnology (2011) [http://dx.doi.org/10.1038/nbt.1775 doi:10.1038/nbt.1775]~~
-
-	~~'''Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips'''<br>~~
-	~~[[Sriram Kosuri]], [[User:Nikolai_Eroshenko\|Nikolai Eroshenko]], Emily LeProust, Michael Super, Jeffrey Way, Jin Billy Li & [[George_Church\|George Church]]<br>~~
-	~~''Nature Biotechnology'' (2010) '''28''':1295 [http://dx.doi.org/10.1038/nbt.1716 doi:10.1038/nbt.1716]~~
-	~~[http://dx.doi.org/10.1038/nbt.1723 News & Views], [http://www.nature.com/nbt/journal/v28/n12/covers/index.html Cover Art]~~
-
-	~~'''TABASCO: A single molecule, base-pair resolved gene expression simulator'''<br>~~
-	~~[[Sriram Kosuri]], [[Jason Kelly]] and [[Drew Endy]]<br>~~
-	~~''BMC Bioinformatics 2007'', '''8''':480 doi:10.1186/1471-2105-8-480<br>~~
-	~~[http://www.biomedcentral.com/1471-2105/8/480 URL]<br>~~
-
-	~~'''Refactoring bacteriophage T7'''<br>~~
-	~~[[Leon Chan\|Leon Y. Chan]], [[Sriram Kosuri]] and [[Drew Endy]]<br>~~
-	~~''Molecular Systems Biology'' 13 September 2005 DOI:10.1038/msb4100025<br>~~
-	~~[http://www.nature.com/msb/journal/v1/n1/full/msb4100025.html URL]~~
-	~~[http://openwetware.mit.edu/images/e/ef/Msb4100025.pdf PDF reprint]~~
-	~~[http://www.nature.com/msb/journal/v1/n1/full/msb4100028.html News & Views]~~
-	~~[http://hdl.handle.net/1721.1/27501 October 2004 version]~~

	===Interesting Stuff===		===Interesting Stuff===

Skosuri at 18:32, 20 January 2011

Skosuri — Thu, 20 Jan 2011 18:32:23 GMT

←Older revision		Revision as of 18:32, 20 January 2011
Line 37:		Line 37:
	[[Sriram Kosuri]], [[User:Nikolai_Eroshenko\|Nikolai Eroshenko]], Emily LeProust, Michael Super, Jeffrey Way, Jin Billy Li & [[George_Church\|George Church]]<br>		[[Sriram Kosuri]], [[User:Nikolai_Eroshenko\|Nikolai Eroshenko]], Emily LeProust, Michael Super, Jeffrey Way, Jin Billy Li & [[George_Church\|George Church]]<br>
	''Nature Biotechnology'' (2010) '''28''':1295 [http://dx.doi.org/10.1038/nbt.1716 doi:10.1038/nbt.1716]		''Nature Biotechnology'' (2010) '''28''':1295 [http://dx.doi.org/10.1038/nbt.1716 doi:10.1038/nbt.1716]
-	[http://dx.doi.org/10.1038/nbt.1723 News & Views]	+	[http://dx.doi.org/10.1038/nbt.1723 News & Views], [http://www.nature.com/nbt/journal/v28/n12/covers/index.html Cover Art]

	'''TABASCO: A single molecule, base-pair resolved gene expression simulator'''<br>		'''TABASCO: A single molecule, base-pair resolved gene expression simulator'''<br>

Skosuri at 15:59, 20 January 2011

Skosuri — Thu, 20 Jan 2011 15:59:39 GMT

←Older revision		Revision as of 15:59, 20 January 2011
Line 31:		Line 31:
	===Publications===		===Publications===
	'''Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription'''<br>		'''Efficient construction of sequence-specific TAL effectors for modulating mammalian transcription'''<br>
-	Feng Zhang, Le Cong, Simona Lodato, [[Sriram Kosuri]], [[George_Church\|George M. Church]] & Paola Arlotta <br>	+	Feng Zhang, Le Cong, Simona Lodato, [[Sriram Kosuri]], [[George_Church\|George Church]] & Paola Arlotta <br>
	''Nature Biotechnology (2011) [http://dx.doi.org/10.1038/nbt.1775 doi:10.1038/nbt.1775]		''Nature Biotechnology (2011) [http://dx.doi.org/10.1038/nbt.1775 doi:10.1038/nbt.1775]

Skosuri at 15:59, 20 January 2011

Skosuri — Thu, 20 Jan 2011 15:59:09 GMT

←Older revision		Revision as of 15:59, 20 January 2011
Line 38:		Line 38:
	''Nature Biotechnology'' (2010) '''28''':1295 [http://dx.doi.org/10.1038/nbt.1716 doi:10.1038/nbt.1716]		''Nature Biotechnology'' (2010) '''28''':1295 [http://dx.doi.org/10.1038/nbt.1716 doi:10.1038/nbt.1716]
	[http://dx.doi.org/10.1038/nbt.1723 News & Views]		[http://dx.doi.org/10.1038/nbt.1723 News & Views]
		+
		+	'''TABASCO: A single molecule, base-pair resolved gene expression simulator'''<br>
		+	[[Sriram Kosuri]], [[Jason Kelly]] and [[Drew Endy]]<br>
		+	''BMC Bioinformatics 2007'', '''8''':480 doi:10.1186/1471-2105-8-480<br>
		+	[http://www.biomedcentral.com/1471-2105/8/480 URL]<br>

	'''Refactoring bacteriophage T7'''<br>		'''Refactoring bacteriophage T7'''<br>
Line 46:		Line 51:
	[http://www.nature.com/msb/journal/v1/n1/full/msb4100028.html News & Views]		[http://www.nature.com/msb/journal/v1/n1/full/msb4100028.html News & Views]
	[http://hdl.handle.net/1721.1/27501 October 2004 version]		[http://hdl.handle.net/1721.1/27501 October 2004 version]
-
-	~~'''TABASCO: A single molecule, base-pair resolved gene expression simulator'''<br>~~
-	~~[[Sriram Kosuri]], [[Jason Kelly]] and [[Drew Endy]]<br>~~
-	~~''BMC Bioinformatics 2007'', '''8''':480 doi:10.1186/1471-2105-8-480<br>~~
-	~~[http://www.biomedcentral.com/1471-2105/8/480 URL]<br>~~

	===Interesting Stuff===		===Interesting Stuff===