Smolke:Journal Club

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{{Smolke_Top}}
{{Smolke_Top}}
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=2014 Spring=
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=2014-2015 Journal Club=
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|-
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! 19-May
! 19-May
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| 11:00 am || Spilker 143 || ||
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| 11:00 am || Spilker 143 || Lee & Church || Joy
|-
|-
! 16-Jun
! 16-Jun
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| 11:00 am || Spilker 143 ||  ||  
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| 11:00 am || Spilker 143 || Xiong || Yanran
 +
|-
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! Jul
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|  ||  ||  || Kathy
 +
|-
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! Aug
 +
|  ||  ||  || Isis
 +
|-
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! Sep
 +
|  ||  ||  || Remus
 +
|-
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! Oct
 +
|  ||  ||  || Yen-Hsiang
 +
|-
 +
! Nov
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|  ||  ||  || Melina
 +
|-
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! Dec
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|  ||  ||  || Kate
 +
|-
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! Jan
 +
|  ||  ||  || Peter
 +
|-
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! Feb
 +
|  ||  ||  || Maureen
 +
|-
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! Mar
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|  ||  ||  || Michale
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|-
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! Apr
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|  ||  ||  || Stephanie
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|-
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! May
 +
|  ||  ||  || Shireen
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|-
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! Jun
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|  ||  ||  || Ben
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|-
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! Jul
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|  ||  ||  || Joy
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|-
|}
|}
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==Paper to be discussed==
 +
<biblio>
 +
#Xiong pmid=24912182
 +
 +
</biblio>
-
==Suggested Future Papers==
+
==Interesting Papers==
*suggestions with pmid links. Click on an author name to go to the paper OR click on the HubMed link at the bottom of the page to see all abstracts.
*suggestions with pmid links. Click on an author name to go to the paper OR click on the HubMed link at the bottom of the page to see all abstracts.
 +
<biblio>
 +
#Duss pmid=24828038
 +
#Wang pmid=24705516
 +
#Annaluru pmid=24674868
 +
#Kotula pmid=24639514
 +
#Birmingham pmid=24657930
 +
#Lian pmid=24853351
 +
 +
 +
</biblio>
 +
 +
This last HubMed link seems to work. Click on it to bring up all the abstracts. This should facilitate voting. To add your paper this way, get the pmid from pubmed, and follow the format when editing. The PubMed link doesn't seem to work. Anyone know why?
 +
 +
==Past Papers==
 +
* Past papers
<biblio>
<biblio>
#Chapman pmid=24744377
#Chapman pmid=24744377
#Fica pmid=24747940
#Fica pmid=24747940
#Lee pmid=24747838
#Lee pmid=24747838
-
#Wang pmid=24705516
 
#Saldana-Meyer pmid=24696455
#Saldana-Meyer pmid=24696455
#Liu pmid=24695221
#Liu pmid=24695221
#Cao pmid=24677733
#Cao pmid=24677733
-
#Annaluru pmid=24674868
 
-
#Kotula pmid=24639514
 
#Church pmid=24622617
#Church pmid=24622617
#Karas pmid=24603933
#Karas pmid=24603933
Line 42: Line 98:
#Avendano pmid=24189549
#Avendano pmid=24189549
#Qi pmid=22383579
#Qi pmid=22383579
-
#Birmingham pmid=24657930
 
-
 
-
 
-
</biblio>
 
-
 
-
This last HubMed link seems to work. Click on it to bring up all the abstracts. This should facilitate voting. To add your paper this way, get the pmid from pubmed, and follow the format when editing. The PubMed link doesn't seem to work. Anyone know why?
 
-
 
-
==Comments on Papers==
 
-
 
-
==Voting on Papers==
 
-
Vote for May 19st, 2014
 
-
*'''Chapman''':
 
-
*'''Fica''':
 
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*'''Lee & Church''':MHM, SG, JX, PM, YHW
 
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*'''Lee & Irudayaraj''':
 
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*'''Wang''': YL, KT, SG, YHW
 
-
*'''Saldana-Meyer''':
 
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*'''Liu''':
 
-
*'''Cao''':
 
-
*'''Annaluru''': YL, MHM only if Remus moderates :), IJT
 
-
*'''Kotula''': IJT, KYW
 
-
*'''Church''':
 
-
*'''Karas''':
 
-
*'''Lee''':
 
-
*'''Ding''':
 
-
*'''Velagapudi''':
 
-
*'''Blazeck''':
 
-
*'''Avendano''':
 
-
*'''Qi''':
 
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*'''Birmingham''': KT
 
-
 
-
 
-
 
-
Vote for Apr. 21st, 2014
 
-
*'''Creasey et al''':
 
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*'''Church et al''':KYW
 
-
*'''Olson et al''':
 
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*'''Karas et al''': KT
 
-
*'''Lee et al''': MHM, MM
 
-
*'''Ding et al''': YL
 
-
*'''Fossati et al''':
 
-
*'''Velagapudi et al''':KYW
 
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*'''Blazeck et al''': KT, MS
 
-
*'''Lienert et al''':
 
-
*'''Enquist-Newman et al''': YL, MS, RW, SG
 
-
*'''Wang et al''':
 
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*'''Avendaño et al''': MHM
 
-
*'''Bogorad et al''':
 
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*'''Qi & Arkin et al''': MM
 
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*'''Ausländer et al''':
 
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*'''Birmingham et al''': SG
 
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*'''Matthews et al''':
 
-
 
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==Past Papers==
 
-
* Past papers
 
-
<biblio>
 
#Alberts pmid=24733905
#Alberts pmid=24733905
#Creasey pmid=24670663
#Creasey pmid=24670663

Revision as of 15:53, 20 June 2014

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Contents

2014-2015 Journal Club

Date Time Location Paper Moderator
21-Apr 11:00 am Spilker 143 Enquist-Newman Kate
19-May 11:00 am Spilker 143 Lee & Church Joy
16-Jun 11:00 am Spilker 143 Xiong Yanran
Jul Kathy
Aug Isis
Sep Remus
Oct Yen-Hsiang
Nov Melina
Dec Kate
Jan Peter
Feb Maureen
Mar Michale
Apr Stephanie
May Shireen
Jun Ben
Jul Joy

Paper to be discussed

  1. Xiong M, Schneiderman DK, Bates FS, Hillmyer MA, and Zhang K. . pmid:24912182. PubMed HubMed [Xiong]

Interesting Papers

  • suggestions with pmid links. Click on an author name to go to the paper OR click on the HubMed link at the bottom of the page to see all abstracts.
  1. Duss O, Michel E, Yulikov M, Schubert M, Jeschke G, and Allain FH. . pmid:24828038. PubMed HubMed [Duss]
  2. Wang BL, Ghaderi A, Zhou H, Agresti J, Weitz DA, Fink GR, and Stephanopoulos G. . pmid:24705516. PubMed HubMed [Wang]
  3. Annaluru N, Muller H, Mitchell LA, Ramalingam S, Stracquadanio G, Richardson SM, Dymond JS, Kuang Z, Scheifele LZ, Cooper EM, Cai Y, Zeller K, Agmon N, Han JS, Hadjithomas M, Tullman J, Caravelli K, Cirelli K, Guo Z, London V, Yeluru A, Murugan S, Kandavelou K, Agier N, Fischer G, Yang K, Martin JA, Bilgel M, Bohutski P, Boulier KM, Capaldo BJ, Chang J, Charoen K, Choi WJ, Deng P, DiCarlo JE, Doong J, Dunn J, Feinberg JI, Fernandez C, Floria CE, Gladowski D, Hadidi P, Ishizuka I, Jabbari J, Lau CY, Lee PA, Li S, Lin D, Linder ME, Ling J, Liu J, Liu J, London M, Ma H, Mao J, McDade JE, McMillan A, Moore AM, Oh WC, Ouyang Y, Patel R, Paul M, Paulsen LC, Qiu J, Rhee A, Rubashkin MG, Soh IY, Sotuyo NE, Srinivas V, Suarez A, Wong A, Wong R, Xie WR, Xu Y, Yu AT, Koszul R, Bader JS, Boeke JD, and Chandrasegaran S. . pmid:24674868. PubMed HubMed [Annaluru]
  4. Kotula JW, Kerns SJ, Shaket LA, Siraj L, Collins JJ, Way JC, and Silver PA. . pmid:24639514. PubMed HubMed [Kotula]
  5. Birmingham WR, Starbird CA, Panosian TD, Nannemann DP, Iverson TM, and Bachmann BO. . pmid:24657930. PubMed HubMed [Birmingham]
  6. Lian J, Si T, Nair NU, and Zhao H. . pmid:24853351. PubMed HubMed [Lian]
All Medline abstracts: PubMed HubMed

This last HubMed link seems to work. Click on it to bring up all the abstracts. This should facilitate voting. To add your paper this way, get the pmid from pubmed, and follow the format when editing. The PubMed link doesn't seem to work. Anyone know why?

Past Papers

  • Past papers
  1. Wang X, Lu Z, Gomez A, Hon GC, Yue Y, Han D, Fu Y, Parisien M, Dai Q, Jia G, Ren B, Pan T, and He C. . pmid:24284625. PubMed HubMed [Wang]
  2. Chapman EG, Costantino DA, Rabe JL, Moon SL, Wilusz J, Nix JC, and Kieft JS. . pmid:24744377. PubMed HubMed [Chapman]
  3. Fica SM, Tuttle N, Novak T, Li NS, Lu J, Koodathingal P, Dai Q, Staley JP, and Piccirilli JA. . pmid:24196718. PubMed HubMed [Fica]
  4. Fica SM, Mefford MA, Piccirilli JA, and Staley JP. . pmid:24747940. PubMed HubMed [Fica]
  5. Lee JH, Daugharthy ER, Scheiman J, Kalhor R, Yang JL, Ferrante TC, Terry R, Jeanty SS, Li C, Amamoto R, Peters DT, Turczyk BM, Marblestone AH, Inverso SA, Bernard A, Mali P, Rios X, Aach J, and Church GM. . pmid:24578530. PubMed HubMed [Lee]
  6. Lee K, Cui Y, Lee LP, and Irudayaraj J. . pmid:24747838. PubMed HubMed [Lee]
  7. Saldaña-Meyer R, González-Buendía E, Guerrero G, Narendra V, Bonasio R, Recillas-Targa F, and Reinberg D. . pmid:24696455. PubMed HubMed [Saldana-Meyer]
  8. Liu Y, Samuel BS, Breen PC, and Ruvkun G. . pmid:24695221. PubMed HubMed [Liu]
  9. Cao J, Arha M, Sudrik C, Schaffer DV, and Kane RS. . pmid:24677733. PubMed HubMed [Cao]
  10. Church GM, Elowitz MB, Smolke CD, Voigt CA, and Weiss R. . pmid:24622617. PubMed HubMed [Church]
  11. Karas BJ, Jablanovic J, Irvine E, Sun L, Ma L, Weyman PD, Gibson DG, Glass JI, Venter JC, Hutchison CA 3rd, Smith HO, and Suzuki Y. . pmid:24603933. PubMed HubMed [Karas]
  12. Ding Y, Tang Y, Kwok CK, Zhang Y, Bevilacqua PC, and Assmann SM. . pmid:24270811. PubMed HubMed [Ding]
  13. Ding BJ, Hofvander P, Wang HL, Durrett TP, Stymne S, and Löfstedt C. . pmid:24569486. PubMed HubMed [Ding]
  14. Velagapudi SP, Gallo SM, and Disney MD. . pmid:24509821. PubMed HubMed [Velagapudi]
  15. Blazeck J, Hill A, Liu L, Knight R, Miller J, Pan A, Otoupal P, and Alper HS. . pmid:24445655. PubMed HubMed [Blazeck]
  16. Avendaño MS, Leidy C, and Pedraza JM. . pmid:24189549. PubMed HubMed [Avendano]
  17. Qi L, Lucks JB, Liu CC, Mutalik VK, and Arkin AP. . pmid:22383579. PubMed HubMed [Qi]
  18. Alberts B, Kirschner MW, Tilghman S, and Varmus H. . pmid:24733905. PubMed HubMed [Alberts]
  19. Creasey KM, Zhai J, Borges F, Van Ex F, Regulski M, Meyers BC, and Martienssen RA. . pmid:24670663. PubMed HubMed [Creasey]
  20. Olson EJ, Hartsough LA, Landry BP, Shroff R, and Tabor JJ. . pmid:24608181. PubMed HubMed [Olson]
  21. Fossati E, Ekins A, Narcross L, Zhu Y, Falgueyret JP, Beaudoin GA, Facchini PJ, and Martin VJ. . pmid:24513861. PubMed HubMed [Fossati]
  22. Lienert F, Lohmueller JJ, Garg A, and Silver PA. . pmid:24434884. PubMed HubMed [Lienert]
  23. Enquist-Newman M, Faust AM, Bravo DD, Santos CN, Raisner RM, Hanel A, Sarvabhowman P, Le C, Regitsky DD, Cooper SR, Peereboom L, Clark A, Martinez Y, Goldsmith J, Cho MY, Donohoue PD, Luo L, Lamberson B, Tamrakar P, Kim EJ, Villari JL, Gill A, Tripathi SA, Karamchedu P, Paredes CJ, Rajgarhia V, Kotlar HK, Bailey RB, Miller DJ, Ohler NL, Swimmer C, and Yoshikuni Y. . pmid:24291791. PubMed HubMed [Enquist-Newman]
  24. Bogorad IW, Lin TS, and Liao JC. . pmid:24077099. PubMed HubMed [Bogorad]
  25. Ausländer S, Ausländer D, Müller M, Wieland M, and Fussenegger M. . pmid:22722847. PubMed HubMed [Auslander]
  26. Matthews ML, Chang WC, Layne AP, Miles LA, Krebs C, and Bollinger JM Jr. . pmid:24463698. PubMed HubMed [Matthews]
  27. Nishimasu H, Ran FA, Hsu PD, Konermann S, Shehata SI, Dohmae N, Ishitani R, Zhang F, and Nureki O. . pmid:24529477. PubMed HubMed [Nishimasu]
  28. Hammerling MJ, Ellefson JW, Boutz DR, Marcotte EM, Ellington AD, and Barrick JE. . pmid:24487692. PubMed HubMed [Hammerling]
  29. Moses T, Pollier J, Almagro L, Buyst D, Van Montagu M, Pedreño MA, Martins JC, Thevelein JM, and Goossens A. . pmid:24434554. PubMed HubMed [Moses]
  30. Mutalik VK, Qi L, Guimaraes JC, Lucks JB, and Arkin AP. . pmid:22446835. PubMed HubMed [Mutalik]
  31. Carter GT. . pmid:24468674. PubMed HubMed [Carter]
  32. Li H, Opgenorth PH, Wernick DG, Rogers S, Wu TY, Higashide W, Malati P, Huo YX, Cho KM, and Liao JC. . pmid:22461604. PubMed HubMed [Li_H]
  33. Paddon CJ, Westfall PJ, Pitera DJ, Benjamin K, Fisher K, McPhee D, Leavell MD, Tai A, Main A, Eng D, Polichuk DR, Teoh KH, Reed DW, Treynor T, Lenihan J, Fleck M, Bajad S, Dang G, Dengrove D, Diola D, Dorin G, Ellens KW, Fickes S, Galazzo J, Gaucher SP, Geistlinger T, Henry R, Hepp M, Horning T, Iqbal T, Jiang H, Kizer L, Lieu B, Melis D, Moss N, Regentin R, Secrest S, Tsuruta H, Vazquez R, Westblade LF, Xu L, Yu M, Zhang Y, Zhao L, Lievense J, Covello PS, Keasling JD, Reiling KK, Renninger NS, and Newman JD. . pmid:23575629. PubMed HubMed [Paddon]
  34. Sandoval NR, Kim JY, Glebes TY, Reeder PJ, Aucoin HR, Warner JR, and Gill RT. . pmid:22689973. PubMed HubMed [sandoval]
  35. Douglas SM, Bachelet I, and Church GM. . pmid:22344439. PubMed HubMed [douglas]
  36. Fu J, Bian X, Hu S, Wang H, Huang F, Seibert PM, Plaza A, Xia L, Müller R, Stewart AF, and Zhang Y. . pmid:22544021. PubMed HubMed [fu]
  37. Paige JS, Wu KY, and Jaffrey SR. . pmid:21798953. PubMed HubMed [paige]
  38. Paige JS, Nguyen-Duc T, Song W, and Jaffrey SR. . pmid:22403384. PubMed HubMed [paige]
  39. Pinheiro VB, Taylor AI, Cozens C, Abramov M, Renders M, Zhang S, Chaput JC, Wengel J, Peak-Chew SY, McLaughlin SH, Herdewijn P, and Holliger P. . pmid:22517858. PubMed HubMed [pinheiro]
  40. Sharon E, Kalma Y, Sharp A, Raveh-Sadka T, Levo M, Zeevi D, Keren L, Yakhini Z, Weinberger A, and Segal E. . pmid:22609971. PubMed HubMed [sharon]
  41. Karr JR, Sanghvi JC, Macklin DN, Gutschow MV, Jacobs JM, Bolival B Jr, Assad-Garcia N, Glass JI, and Covert MW. . pmid:22817898. PubMed HubMed [karr]
  42. Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, and Charpentier E. . pmid:22745249. PubMed HubMed [jinek]
  43. Qi L, Haurwitz RE, Shao W, Doudna JA, and Arkin AP. . pmid:22983090. PubMed HubMed [qi]
  44. Choi YJ and Lee SY. . pmid:24077097. PubMed HubMed [Choi]
  45. Salmena L, Poliseno L, Tay Y, Kats L, and Pandolfi PP. . pmid:21802130. PubMed HubMed [salmena]
  46. Cong L, Ran FA, Cox D, Lin S, Barretto R, Habib N, Hsu PD, Wu X, Jiang W, Marraffini LA, and Zhang F. . pmid:23287718. PubMed HubMed [Cong]
  47. Mali P, Yang L, Esvelt KM, Aach J, Guell M, DiCarlo JE, Norville JE, and Church GM. . pmid:23287722. PubMed HubMed [Mali]
  48. Hwang WY, Fu Y, Reyon D, Maeder ML, Tsai SQ, Sander JD, Peterson RT, Yeh JR, and Joung JK. . pmid:23360964. PubMed HubMed [Hwang]
  49. Jiang W, Bikard D, Cox D, Zhang F, and Marraffini LA. . pmid:23360965. PubMed HubMed [Jiang]
  50. Cho SW, Kim S, Kim JM, and Kim JS. . pmid:23360966. PubMed HubMed [Cho]
  51. Coelho PS, Brustad EM, Kannan A, and Arnold FH. . pmid:23258409. PubMed HubMed [Coelho]
  52. Spitale RC, Crisalli P, Flynn RA, Torre EA, Kool ET, and Chang HY. . pmid:23178934. PubMed HubMed [Spitale]
  53. Frieda KL and Block SM. . pmid:23087247. PubMed HubMed [block]
  54. Wargacki AJ, Leonard E, Win MN, Regitsky DD, Santos CN, Kim PB, Cooper SR, Raisner RM, Herman A, Sivitz AB, Lakshmanaswamy A, Kashiyama Y, Baker D, and Yoshikuni Y. . pmid:22267807. PubMed HubMed [wargacki]
  55. Bonacci W, Teng PK, Afonso B, Niederholtmeyer H, Grob P, Silver PA, and Savage DF. . pmid:22184212. PubMed HubMed [bonacci]
  56. Carothers JM, Goler JA, Juminaga D, and Keasling JD. . pmid:22194579. PubMed HubMed [carothers]
  57. Conrado RJ, Wu GC, Boock JT, Xu H, Chen SY, Lebar T, Turnšek J, Tomšič N, Avbelj M, Gaber R, Koprivnjak T, Mori J, Glavnik V, Vovk I, Benčina M, Hodnik V, Anderluh G, Dueber JE, Jerala R, and DeLisa MP. . pmid:22021385. PubMed HubMed [conrado]
  58. Dellomonaco C, Clomburg JM, Miller EN, and Gonzalez R. . pmid:21832992. PubMed HubMed [dellomonaco]
  59. Dymond JS, Richardson SM, Coombes CE, Babatz T, Muller H, Annaluru N, Blake WJ, Schwerzmann JW, Dai J, Lindstrom DL, Boeke AC, Gottschling DE, Chandrasegaran S, Bader JS, and Boeke JD. . pmid:21918511. PubMed HubMed [dymond]
  60. Xie Z, Liu SJ, Bleris L, and Benenson Y. . pmid:20194121. PubMed HubMed [xie]
  61. Leisner M, Bleris L, Lohmueller J, Xie Z, and Benenson Y. . pmid:20622866. PubMed HubMed [leisner]
  62. Saito H, Fujita Y, Kashida S, Hayashi K, and Inoue T. . pmid:21245841. PubMed HubMed [saito]
  63. Yim H, Haselbeck R, Niu W, Pujol-Baxley C, Burgard A, Boldt J, Khandurina J, Trawick JD, Osterhout RE, Stephen R, Estadilla J, Teisan S, Schreyer HB, Andrae S, Yang TH, Lee SY, Burk MJ, and Van Dien S. . pmid:21602812. PubMed HubMed [yim]
  64. Esvelt KM, Carlson JC, and Liu DR. . pmid:21478873. PubMed HubMed [esvelt]
  65. Schirmer A, Rude MA, Li X, Popova E, and del Cardayre SB. . pmid:20671186. PubMed HubMed [schirmer]
  66. Sinha J, Reyes SJ, and Gallivan JP. . pmid:20453864. PubMed HubMed [sinha]
  67. Neumann H, Wang K, Davis L, Garcia-Alai M, and Chin JW. . pmid:20154731. PubMed HubMed [neumann]
  68. Drinnenberg IA, Weinberg DE, Xie KT, Mower JP, Wolfe KH, Fink GR, and Bartel DP. . pmid:19745116. PubMed HubMed [drinnenberg]
  69. Dueber JE, Wu GC, Malmirchegini GR, Moon TS, Petzold CJ, Ullal AV, Prather KL, and Keasling JD. . pmid:19648908. PubMed HubMed [dueber]
  70. Wang HH, Isaacs FJ, Carr PA, Sun ZZ, Xu G, Forest CR, and Church GM. . pmid:19633652. PubMed HubMed [wang]
  71. Yu RC, Pesce CG, Colman-Lerner A, Lok L, Pincus D, Serra E, Holl M, Benjamin K, Gordon A, and Brent R. . pmid:19079053. PubMed HubMed [yu]
  72. Lincoln TA and Joyce GF. . pmid:19131595. PubMed HubMed [lincoln]
  73. Lam BJ and Joyce GF. . pmid:19234448. PubMed HubMed [lam]
  74. Nevozhay D, Adams RM, Murphy KF, Josic K, and Balázsi G. . pmid:19279212. PubMed HubMed [nevozhay]
  75. Imai M, Watanabe T, Hatta M, Das SC, Ozawa M, Shinya K, Zhong G, Hanson A, Katsura H, Watanabe S, Li C, Kawakami E, Yamada S, Kiso M, Suzuki Y, Maher EA, Neumann G, and Kawaoka Y. . pmid:22722205. PubMed HubMed [imai]
  76. Zhang F, Carothers J, Keasling JD. Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids. Nature Biotechnology 2012, doi:10.1038/nbt.2149 [sensor]
All Medline abstracts: PubMed HubMed
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