Smolke:Journal Club: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
(417 intermediate revisions by 24 users not shown) | |||
Line 1: | Line 1: | ||
{{Smolke_Top}} | {{Smolke_Top}} | ||
= | |||
=2014 Spring= | |||
{| border="1" | |||
|+ | |||
! Date !! Time !! Location !! Paper !! Moderator | |||
|- | |||
! 21-Apr | |||
| 11:00 am || Spilker 143 || Enquist-Newman || Kate | |||
|- | |||
! 19-May | |||
| 11:00 am || Spilker 143 || || | |||
|- | |||
! 16-Jun | |||
| 11:00 am || Spilker 143 || || | |||
|- | |||
|} | |||
==Suggested Future Papers== | ==Suggested Future Papers== | ||
*suggestions with pmid links. Click on an author name to go to the paper OR click on the HubMed link at the bottom of the page to see all abstracts. | |||
# | |||
# | <biblio> | ||
# | #Wang pmid=24705516 | ||
# | #Saldaña-Meyer pmid=24696455 | ||
# | #Liu pmid=24695221 | ||
# | #Cao pmid=24677733 | ||
# | #Kotula pmid=24639514 | ||
# | #Creasey pmid=24670663 | ||
#Church pmid=24622617 | |||
#Olson pmid=24608181 | |||
#Karas pmid=24603933 | |||
#Lee pmid=24578530 | |||
#Ding pmid=24569486 | |||
#Fossati pmid=24513861 | |||
#Velagapudi pmid=24509821 | |||
#Blazeck pmid=24445655 | |||
#Lienert pmid=24434884 | |||
#Enquist-Newman pmid=24291791 | |||
#Wang pmid=24284625 | |||
#Avendano pmid=24189549 | |||
#Bogorad pmid=24077099 | |||
#Qi pmid=22383579 | |||
#Auslander pmid=22722847 | |||
#Birmingham pmid=24657930 | |||
#Matthews pmid=24463698 | |||
</biblio> | |||
This last HubMed link seems to work. Click on it to bring up all the abstracts. This should facilitate voting. To add your paper this way, get the pmid from pubmed, and follow the format when editing. The PubMed link doesn't seem to work. Anyone know why? | |||
==Comments on Papers== | ==Comments on Papers== | ||
==Voting on Papers== | ==Voting on Papers== | ||
*''' | Vote for Apr. 21st, 2014 | ||
*''' | *'''Creasey et al''': | ||
*''' | *'''Church et al''':KYW | ||
*''' | *'''Olson et al''': | ||
*''' | *'''Karas et al''': KT | ||
*''' | *'''Lee et al''': MHM, MM | ||
*'''Ding et al''': YL | |||
*'''Fossati et al''': | |||
*'''Velagapudi et al''':KYW | |||
*'''Blazeck et al''': KT, MS | |||
*'''Lienert et al''': | |||
*'''Enquist-Newman et al''': YL, MS, RW, SG | |||
*'''Wang et al''': | |||
*'''Avendaño et al''': MHM | |||
*'''Bogorad et al''': | |||
*'''Qi & Arkin et al''': MM | |||
*'''Ausländer et al''': | |||
*'''Birmingham et al''': SG | |||
*'''Matthews et al''': | |||
Vote for Mar 17th, 2014 | |||
*'''Ding et al''': KT | |||
*'''Nishimasu et al''': | |||
*'''Fossati et al''': YHW, MSS, IJT | |||
*'''Velagapudi et al''':KYW, MHM | |||
*'''Hammerling''': | |||
*'''Lienert''':KYW, JVV | |||
*'''Moses et al''': YL, KT, SG, IJT | |||
*'''Enquist-Newman et al''': YL, YHW, MSS | |||
*'''Avendaño et al''': MHM | |||
*'''Bogorad et al''': SG | |||
*'''Mutalic et al''': | |||
*'''Qi & Arkin et al''': JVV | |||
*'''Ausländer et al''': RW | |||
==Past Papers== | ==Past Papers== | ||
* Past papers | |||
<biblio> | <biblio> | ||
# | #Nishimasu pmid=24529477 | ||
# | #Hammerling pmid=24487692 | ||
# | #Moses pmid=24434554 | ||
# | #Mutalik pmid=22446835 | ||
# | #Ding pmid=24270811 | ||
# | #Carter pmid=24468674 | ||
#Fica pmid=24196718 | |||
#Li_H pmid=22461604 | |||
#Paddon pmid=23575629 | |||
#sandoval pmid=22689973 | |||
#douglas pmid=22344439 | |||
#fu pmid=22544021 | |||
#paige pmid=21798953 | |||
#paige pmid=22403384 | |||
#pinheiro pmid=22517858 | |||
#sharon pmid=22609971 | |||
#karr pmid=22817898 | |||
#jinek pmid=22745249 | |||
#qi pmid=22983090 | |||
#Choi pmid=24077097 | |||
#salmena pmid=21802130 | |||
#Cong pmid=23287718 | |||
#Mali pmid=23287722 | |||
#Hwang pmid=23360964 | |||
#Jiang pmid=23360965 | |||
#Cho pmid=23360966 | |||
#Coelho pmid=23258409 | |||
#Spitale pmid=23178934 | |||
#block pmid=23087247 | |||
#wargacki pmid=22267807 | |||
#bonacci pmid=22184212 | |||
#carothers pmid=22194579 | |||
#conrado pmid=22021385 | |||
#dellomonaco pmid=21832992 | |||
#dymond pmid=21918511 | |||
#xie pmid=20194121 | |||
#leisner pmid=20622866 | |||
#saito pmid=21245841 | |||
#yim pmid=21602812 | |||
#esvelt pmid=21478873 | |||
#schirmer pmid=20671186 | #schirmer pmid=20671186 | ||
#sinha pmid=20453864 | #sinha pmid=20453864 | ||
Line 48: | Line 147: | ||
#lam pmid=19234448 | #lam pmid=19234448 | ||
#nevozhay pmid=19279212 | #nevozhay pmid=19279212 | ||
#imai pmid=22722205 | |||
#sensor Zhang F, Carothers J, Keasling JD. Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids. Nature Biotechnology 2012, doi:10.1038/nbt.2149 | |||
</biblio> | </biblio> | ||
==Aged Out== | ==Aged Out== | ||
<biblio> | |||
#Li_G pmid=22456704 | |||
#Low pmid=22314289 | |||
#regot pmid=21150900 | |||
#Moss-Racusin pmid=22988126 | |||
#Nevozhay pmid=23385595 | |||
#Na pmid=23334451 | |||
#Pezo pmid=23447021 | |||
#Berthoumieux pmid=23340840 | |||
#Hanauer pmid=23222833 | |||
#Hajdin pmid=23503844 | |||
</biblio> | |||
#Valderrama-Rincon JD, et al. An engineered eukaryotic protein glycosylation pathway in Escherichia coli. Nature Chemical Biology 2012, doi:10.1038/nchembio.921 | |||
#The arsenic bacteria paper, the 8 technical comments, and the authors' reply. | |||
#Shen, Claire R., Lan, Ethan I., Dekishima, Yasumasa, Baez, Antonino, Cho, Kwang Myung, Liao, James C. High titer anaerobic 1-butanol synthesis in Escherichia coli enabled by driving forces. Appl. Environ. Microbiol. 2011 0: AEM.03034-10 | |||
#Bond-Watts BB, Bellerose RJ and Chang MC. Enzyme mechanism as a kinetic control element for designing synthetic biofuel pathways. Nature Chemical Biology. April 2011. 222-227. | |||
#Paige, J.S., et al. RNA Mimics of Green Fluorescent Protein. Science 29 July 2011: 333, 642-646. | |||
#Wochner A, Attwater J, Coulson A, Holliger P. Ribozyme-catalyzed transcription of an active ribozyme. Science. 2011 Apr 8;332(6026):209-12. | |||
#baker pmid=22194412 | |||
#Brown ME, Walker MC, Nakashige TG, Iavarone AT, Chang MC. Discovery and characterization of heme enzymes from unsequenced bacteria: Application to microbial lignin degradation. JACS 2011, 133, 18006-18009. dx.doi.org/10.1021/ja203972q | |||
#Porter DL, Levine BL, Kalos M, Bagg A, June CH. Chimeric Antigen Receptor-Modified T Cells in Chronic Lymphoid Leukemia. N Engl J Med. 2011 Aug 10. | |||
#Milias-Argeitis A, Summers S, Stewart-Ornstein J, Zuleta I, Pincus D, El-Samad H, Khammash M, Lygeros J. In silico feedback for in vivo regulation of a gene expression circuit. Nature Biotechnology. November 2011. | |||
#Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W, Selbach M. Global quantification of mammalian gene expression control. Nature. 2011 May 19;473(7347):337-42. | #Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W, Selbach M. Global quantification of mammalian gene expression control. Nature. 2011 May 19;473(7347):337-42. | ||
#Isaacs, F.J., et al. Precise Manipulation of Chromosomes in Vivo Enables Genome-Wide Codon Replacement. Science 15 July 2011: 333 (6040), 348-353. | #Isaacs, F.J., et al. Precise Manipulation of Chromosomes in Vivo Enables Genome-Wide Codon Replacement. Science 15 July 2011: 333 (6040), 348-353. |
Revision as of 12:13, 9 April 2014