Smolke:Journal Club

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(Suggested Future Papers)
(Suggested Future Papers)
Line 42: Line 42:
#Auslander pmid=22722847
#Auslander pmid=22722847
#Birmingham pmid=24657930
#Birmingham pmid=24657930
 +
#Matthews pmid=24463698
</biblio>
</biblio>

Revision as of 20:31, 26 March 2014

Home        Contact        Internal        Protocols        Lab Members        Publications        Research       


Contents

2014 Spring

Date Time Location Paper Moderator
21-Apr 11:00 am Spilker 143
19-May 11:00 am Spilker 143
16-Jun 11:00 am Spilker 143


Suggested Future Papers

  • suggestions with pmid links. Click on an author name to go to the paper OR click on the HubMed link at the bottom of the page to see all abstracts.
Error fetching PMID 24622617:
Error fetching PMID 24608181:
Error fetching PMID 24603933:
Error fetching PMID 24578530:
Error fetching PMID 24569486:
Error fetching PMID 24513861:
Error fetching PMID 24509821:
Error fetching PMID 24445655:
Error fetching PMID 24434884:
Error fetching PMID 24291791:
Error fetching PMID 24284625:
Error fetching PMID 24189549:
Error fetching PMID 24077099:
Error fetching PMID 22383579:
Error fetching PMID 22722847:
Error fetching PMID 24657930:
Error fetching PMID 24463698:
  1. http://www.nature.com/nature/journal/vaop/ncurrent/full/nature13069.html [Creasey]
  2. Error fetching PMID 24622617: [Church]
  3. Error fetching PMID 24608181: [Olson]
  4. Error fetching PMID 24603933: [Karas]
  5. Error fetching PMID 24578530: [Lee]
  6. Error fetching PMID 24569486: [Ding]
  7. Error fetching PMID 24513861: [Fossati]
  8. Error fetching PMID 24509821: [Velagapudi]
  9. Error fetching PMID 24445655: [Blazeck]
  10. Error fetching PMID 24434884: [Lienert]
  11. Error fetching PMID 24291791: [Enquist-Newman]
  12. Error fetching PMID 24284625: [Wang]
  13. Error fetching PMID 24189549: [Avendano]
  14. Error fetching PMID 24077099: [Bogorad]
  15. Error fetching PMID 22383579: [Qi]
  16. Error fetching PMID 22722847: [Auslander]
  17. Error fetching PMID 24657930: [Birmingham]
  18. Error fetching PMID 24463698: [Matthews]
All Medline abstracts: PubMed HubMed

This last HubMed link seems to work. Click on it to bring up all the abstracts. This should facilitate voting. To add your paper this way, get the pmid from pubmed, and follow the format when editing. The PubMed link doesn't seem to work. Anyone know why?

Comments on Papers

Voting on Papers

Vote for Apr. 21st, 2014

  • Creasey et al:
  • Church et al:
  • Olson et al:
  • Karas et al: KT
  • Lee et al: MHM
  • Ding et al: YL
  • Fossati et al:
  • Velagapudi et al:
  • Blazeck et al: KT, MS
  • Lienert et al:
  • Enquist-Newman et al: YL, MS
  • Wang et al:
  • Avendaño et al: MHM
  • Bogorad et al:
  • Qi & Arkin et al:
  • Ausländer et al:


Vote for Mar 17th, 2014

  • Ding et al: KT
  • Nishimasu et al:
  • Fossati et al: YHW, MSS, IJT
  • Velagapudi et al:KYW, MHM
  • Hammerling:
  • Lienert:KYW, JVV
  • Moses et al: YL, KT, SG, IJT
  • Enquist-Newman et al: YL, YHW, MSS
  • Avendaño et al: MHM
  • Bogorad et al: SG
  • Mutalic et al:
  • Qi & Arkin et al: JVV
  • Ausländer et al: RW

Past Papers

  • Past papers
Error fetching PMID 24529477:
Error fetching PMID 24487692:
Error fetching PMID 24434554:
Error fetching PMID 22446835:
Error fetching PMID 24270811:
Error fetching PMID 24468674:
Error fetching PMID 24196718:
Error fetching PMID 22461604:
Error fetching PMID 23575629:
Error fetching PMID 22689973:
Error fetching PMID 22344439:
Error fetching PMID 22544021:
Error fetching PMID 21798953:
Error fetching PMID 22403384:
Error fetching PMID 22517858:
Error fetching PMID 22609971:
Error fetching PMID 22817898:
Error fetching PMID 22745249:
Error fetching PMID 22983090:
Error fetching PMID 24077097:
Error fetching PMID 21802130:
Error fetching PMID 23287718:
Error fetching PMID 23287722:
Error fetching PMID 23360964:
Error fetching PMID 23360965:
Error fetching PMID 23360966:
Error fetching PMID 23258409:
Error fetching PMID 23178934:
Error fetching PMID 23087247:
Error fetching PMID 22267807:
Error fetching PMID 22184212:
Error fetching PMID 22194579:
Error fetching PMID 22021385:
Error fetching PMID 21832992:
Error fetching PMID 21918511:
Error fetching PMID 20194121:
Error fetching PMID 20622866:
Error fetching PMID 21245841:
Error fetching PMID 21602812:
Error fetching PMID 21478873:
Error fetching PMID 20671186:
Error fetching PMID 20453864:
Error fetching PMID 20154731:
Error fetching PMID 19745116:
Error fetching PMID 19648908:
Error fetching PMID 19633652:
Error fetching PMID 19079053:
Error fetching PMID 19131595:
Error fetching PMID 19234448:
Error fetching PMID 19279212:
Error fetching PMID 22722205:
  1. Error fetching PMID 24270811: [Ding]
  2. Error fetching PMID 24529477: [Nishimasu]
  3. Error fetching PMID 24487692: [Hammerling]
  4. Error fetching PMID 24434554: [Moses]
  5. Error fetching PMID 22446835: [Mutalik]
  6. Error fetching PMID 24468674: [Carter]
  7. Error fetching PMID 24196718: [Fica]
  8. Error fetching PMID 22461604: [Li_H]
  9. Error fetching PMID 23575629: [Paddon]
  10. Error fetching PMID 22689973: [sandoval]
  11. Error fetching PMID 22344439: [douglas]
  12. Error fetching PMID 22544021: [fu]
  13. Error fetching PMID 21798953: [paige]
  14. Error fetching PMID 22403384: [paige]
  15. Error fetching PMID 22517858: [pinheiro]
  16. Error fetching PMID 22609971: [sharon]
  17. Error fetching PMID 22817898: [karr]
  18. Error fetching PMID 22745249: [jinek]
  19. Error fetching PMID 22983090: [qi]
  20. Error fetching PMID 24077097: [Choi]
  21. Error fetching PMID 21802130: [salmena]
  22. Error fetching PMID 23287718: [Cong]
  23. Error fetching PMID 23287722: [Mali]
  24. Error fetching PMID 23360964: [Hwang]
  25. Error fetching PMID 23360965: [Jiang]
  26. Error fetching PMID 23360966: [Cho]
  27. Error fetching PMID 23258409: [Coelho]
  28. Error fetching PMID 23178934: [Spitale]
  29. Error fetching PMID 23087247: [block]
  30. Error fetching PMID 22267807: [wargacki]
  31. Error fetching PMID 22184212: [bonacci]
  32. Error fetching PMID 22194579: [carothers]
  33. Error fetching PMID 22021385: [conrado]
  34. Error fetching PMID 21832992: [dellomonaco]
  35. Error fetching PMID 21918511: [dymond]
  36. Error fetching PMID 20194121: [xie]
  37. Error fetching PMID 20622866: [leisner]
  38. Error fetching PMID 21245841: [saito]
  39. Error fetching PMID 21602812: [yim]
  40. Error fetching PMID 21478873: [esvelt]
  41. Error fetching PMID 20671186: [schirmer]
  42. Error fetching PMID 20453864: [sinha]
  43. Error fetching PMID 20154731: [neumann]
  44. Error fetching PMID 19745116: [drinnenberg]
  45. Error fetching PMID 19648908: [dueber]
  46. Error fetching PMID 19633652: [wang]
  47. Error fetching PMID 19079053: [yu]
  48. Error fetching PMID 19131595: [lincoln]
  49. Error fetching PMID 19234448: [lam]
  50. Error fetching PMID 19279212: [nevozhay]
  51. Error fetching PMID 22722205: [imai]
  52. Zhang F, Carothers J, Keasling JD. Design of a dynamic sensor-regulator system for production of chemicals and fuels derived from fatty acids. Nature Biotechnology 2012, doi:10.1038/nbt.2149 [sensor]
All Medline abstracts: PubMed HubMed

Aged Out

Error fetching PMID 22456704:
Error fetching PMID 22314289:
Error fetching PMID 21150900:
Error fetching PMID 22988126:
Error fetching PMID 23385595:
Error fetching PMID 23334451:
Error fetching PMID 23447021:
Error fetching PMID 23340840:
Error fetching PMID 23222833:
Error fetching PMID 23503844:
  1. Error fetching PMID 22456704: [Li_G]
  2. Error fetching PMID 22314289: [Low]
  3. Error fetching PMID 21150900: [regot]
  4. Error fetching PMID 22988126: [Moss-Racusin]
  5. Error fetching PMID 23385595: [Nevozhay]
  6. Error fetching PMID 23334451: [Na]
  7. Error fetching PMID 23447021: [Pezo]
  8. Error fetching PMID 23340840: [Berthoumieux]
  9. Error fetching PMID 23222833: [Hanauer]
  10. Error fetching PMID 23503844: [Hajdin]
All Medline abstracts: PubMed HubMed
  1. Valderrama-Rincon JD, et al. An engineered eukaryotic protein glycosylation pathway in Escherichia coli. Nature Chemical Biology 2012, doi:10.1038/nchembio.921
  2. The arsenic bacteria paper, the 8 technical comments, and the authors' reply.
  3. Shen, Claire R., Lan, Ethan I., Dekishima, Yasumasa, Baez, Antonino, Cho, Kwang Myung, Liao, James C. High titer anaerobic 1-butanol synthesis in Escherichia coli enabled by driving forces. Appl. Environ. Microbiol. 2011 0: AEM.03034-10
  4. Bond-Watts BB, Bellerose RJ and Chang MC. Enzyme mechanism as a kinetic control element for designing synthetic biofuel pathways. Nature Chemical Biology. April 2011. 222-227.
  5. Paige, J.S., et al. RNA Mimics of Green Fluorescent Protein. Science 29 July 2011: 333, 642-646.
  6. Wochner A, Attwater J, Coulson A, Holliger P. Ribozyme-catalyzed transcription of an active ribozyme. Science. 2011 Apr 8;332(6026):209-12.
  7. baker pmid=22194412
  8. Brown ME, Walker MC, Nakashige TG, Iavarone AT, Chang MC. Discovery and characterization of heme enzymes from unsequenced bacteria: Application to microbial lignin degradation. JACS 2011, 133, 18006-18009. dx.doi.org/10.1021/ja203972q
  9. Porter DL, Levine BL, Kalos M, Bagg A, June CH. Chimeric Antigen Receptor-Modified T Cells in Chronic Lymphoid Leukemia. N Engl J Med. 2011 Aug 10.
  10. Milias-Argeitis A, Summers S, Stewart-Ornstein J, Zuleta I, Pincus D, El-Samad H, Khammash M, Lygeros J. In silico feedback for in vivo regulation of a gene expression circuit. Nature Biotechnology. November 2011.
  11. Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W, Selbach M. Global quantification of mammalian gene expression control. Nature. 2011 May 19;473(7347):337-42.
  12. Isaacs, F.J., et al. Precise Manipulation of Chromosomes in Vivo Enables Genome-Wide Codon Replacement. Science 15 July 2011: 333 (6040), 348-353.
  13. Huo YX, Cho KM, Rivera JG, Monte E, Shen CR, Yan Y, Liao JC. Conversion of proteins into biofuels by engineering nitrogen flux. Nat Biotechnol. 2011 Mar 6.
  14. Gevorg Grigorya, Yong Ho Kim, Rudresh Acharya, Kevin Axelrod, Rishabh M. Jain, Lauren Willis, Marija Drndic, James M. Kikkawa, William F. DeGrado. Computational Design of Virus-Like Protein Assemblies on Carbon Nanotube Surfaces. Science 332, 1071 (2011);DOI: 10.1126/science.1198841
  15. Fisher MA, McKinley KL, Bradley LH, Viola SR, Hecht MH. De novo designed proteins from a library of artificial sequences function in Escherichia coli and enable cell growth. PLoS One. 2011 Jan 4; 6(1). PMID: 21245923
  16. Marlière P, Patrouix J, Döring V, Herdewijn P, Tricot S, Cruveiller S, Bouzon M, Mutzel R. Chemical Evolution of a Bacterium's Genome. Angew Chem Int Ed Engl. 2011 Jun 27. doi: 10.1002/anie.201100535.
  17. Greiss S, and Chin JW. Expanding the Genetic Code of an Animal. J Am Chem Soc. 2011 Aug 8
  18. Poelwijk FJ, de Vos MG, Tans SJ. Tradeoffs and Optimality in the Evolution of Gene Regulation. Cell, 5 August 2011
  19. Wang, H, Claveau, D, Vaillancourt, JP, Roemer, T, Meredith, TC. High-frequency transposition for determining antibacterial mode of action. Nat Chem Biol. 2011 Sept 04. doi:10.1038/nchembio.643
  20. Leonard E, Ajikumar PK, Thayer K, Xiao WH, Mo JD, Tidor B, et al. Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control. Proc Natl Acad Sci U S A.107(31):13654-9. PMCID: 2922259.
  21. Matzas M, Stahler PF, Kefer N, Siebelt N, Boisguerin V, Leonard JT, et al. High-fidelity gene synthesis by retrieval of sequence-verified DNA identified using high-throughput pyrosequencing. Nat Biotechnol.28(12):1291-4.
  22. Kosuri S, Eroshenko N, Leproust EM, Super M, Way J, Li JB, et al. Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips. Nat Biotechnol.28(12):1295-9.
  23. Peter Y Watson and Martha J Fedor. The glmS riboswitch integrates signals from activating and inhibitory metabolites in vivo. Nature Structural & Molecular Biology March 2011: 18 (3), 359-363.
  24. Lartigue C, Vashee S, Algire MA, Chuang RY, Benders GA, Ma L, et al. Creating bacterial strains from genomes that have been cloned and engineered in yeast. Science. 2009;325(5948):1693-6.
  25. Iliopoulos D, Hirsch HA, Struhl K. An epigenetic switch involving NF-kappaB, Lin28, Let-7 MicroRNA, and IL6 links inflammation to cell transformation. Cell. 2009;139(4):693-706. PMCID: 2783826.
  26. Agresti JJ, Antipov E, Abate AR, Ahn K, Rowat AC, Baret JC, et al. Ultrahigh-throughput screening in drop-based microfluidics for directed evolution. Proc Natl Acad Sci U S A.107(9):4004-9. PMCID: 2840095.
  27. Verhounig A, Karcher D, Bock R. Inducible gene expression from the plastid genome by a synthetic riboswitch. Proc Natl Acad Sci U S A.107(14):6204-9. PMCID: 2852001.
Error fetching PMID 14726590:
Error fetching PMID 19666472:
Error fetching PMID 20175178:
Error fetching PMID 20185727:
Error fetching PMID 19265475:
Error fetching PMID 19377462:
Error fetching PMID 19416889:
Error fetching PMID 19589923:
Error fetching PMID 19478183:
Error fetching PMID 19536156:
Error fetching PMID 19359587:
Error fetching PMID 19098893:
Error fetching PMID 19151732:
Error fetching PMID 19135890:
Error fetching PMID 15875027:
Error fetching PMID 19327819:
Error fetching PMID 19359021:
Error fetching PMID 19494908:
Error fetching PMID 19578359:
  1. Error fetching PMID 14726590: [zhang]
  2. Error fetching PMID 19666472: [antonczak]
  3. Error fetching PMID 20175178: [zhou]
  4. Error fetching PMID 20185727: [to]
  5. Error fetching PMID 19265475: [jones]
  6. Error fetching PMID 19377462: [ellis]
  7. Error fetching PMID 19416889: [liu]
  8. Error fetching PMID 19589923: [burns]
  9. Error fetching PMID 19478183: [friedland]
  10. Error fetching PMID 19536156: [mitchell]
  11. Error fetching PMID 19359587: [kudla]
  12. Error fetching PMID 19098893: [ray]
  13. Error fetching PMID 19151732: [ranguphan]
  14. Error fetching PMID 19135890: [han]
  15. Error fetching PMID 15875027: [fung]
  16. Error fetching PMID 19327819: [cantone]
  17. Error fetching PMID 19359021: [kempe]
  18. Error fetching PMID 19494908: [tokuriki]
  19. Error fetching PMID 19578359: [eldar]
All Medline abstracts: PubMed HubMed
Personal tools