Sean Lauber:AMIRA - Creating Label Fields by Lung Segmentation: Difference between revisions
From OpenWetWare
Jump to navigationJump to search
No edit summary |
No edit summary |
||
| Line 7: | Line 7: | ||
[[Image:Amira-lung label1.png]] | |||
| Line 14: | Line 14: | ||
[[Image:Amira-lung label2.png]] | [[Image:Amira-lung label2.png]] | ||
4. | |||
Revision as of 11:59, 2 April 2012
In order to evaluate changing densities in the lung of an affected animal, you need to separate the lung portion of the CT scan from the rest of the CT scan. This is done by creating a lung "label field". One method of generated a lung label is by a process called "thoracic segmentation".
1. Open the relevant .raw file
2. Adjust the parameters accordingly. For McMaster I use the following parameters:
3. Open the Segmentation Editor and you should see this page:
4.
