Sauer:Links
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{{Sauer lab sidebar}} | {{Sauer lab sidebar}} | ||
=Biology-related tools= | =Biology-related tools= | ||
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| + | [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi PubMed] | ||
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| + | [http://www.rcsb.org/pdb/home/home.do RCSB Protein Data Bank] | ||
| + | *International database of 3D biological macromolecules | ||
[http://us.expasy.org/ ExPASy Proteomics server] | [http://us.expasy.org/ ExPASy Proteomics server] | ||
| - | *links to many pages to calculate parameters | + | *links to many pages to calculate parameters of your favorite proteins |
[http://genolist.pasteur.fr/Colibri/ Colibri] | [http://genolist.pasteur.fr/Colibri/ Colibri] | ||
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[http://prospector.ucsf.edu/ Protein Prospector] | [http://prospector.ucsf.edu/ Protein Prospector] | ||
*UCSF mass spec site to search fragments, etc. to identify your protein | *UCSF mass spec site to search fragments, etc. to identify your protein | ||
| + | |||
| + | [http://www.bioinfo.rpi.edu/applications/mfold/ mFold] by Michael Zuker. | ||
| + | *This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies. | ||
| + | |||
| + | More good stuff on the [[Synthetic Biology:Tools]] page. | ||
| + | |||
| + | Also see [[Web resources|Science Web Resources]]. | ||
=Companies= | =Companies= | ||
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[http://www5.amershambiosciences.com/APTRIX/upp01077.nsf/content/na_homepage Amersham] | [http://www5.amershambiosciences.com/APTRIX/upp01077.nsf/content/na_homepage Amersham] | ||
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| + | =MIT Links= | ||
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| + | [http://web.mit.edu/ MIT website] | ||
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| + | [http://web.mit.edu/biology/www/ MIT Biology department website] | ||
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| + | [https://webmail.mit.edu/ MIT webmail] | ||
| + | *Login required | ||
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| + | [http://web.mit.edu/ecat/ MIT ECAT ordering] | ||
| + | *Certificate required | ||
| + | *can also get to Sciquest from here and order from GE Healthcare (formerly Amersham), PerkinElmer, Qiagen, Roche Applied Science, USA Scientific, Newark InOne, Sigma-Aldrich, Invitrogen (coming soon) using your MIT account number instead of a credit card. | ||
| + | *For instructions on how to use ECAT, see the [[Sauer:FAQs|FAQs page]]. | ||
| + | |||
| + | [http://web.mit.edu/sapweb/PS1/index.shtml MIT SAPweb] | ||
| + | *Purchase orders, requisitions, etc. Certificate required. | ||
| + | |||
| + | [http://web.mit.edu/biopolymers/www/ Biopolymers facility] | ||
| + | *DNA sequencing, mass spectrometry, protein sequencing, peptide synthesis. | ||
Current revision
Biology-related tools
- International database of 3D biological macromolecules
- links to many pages to calculate parameters of your favorite proteins
- E. coli genome site; get sequences, see the position of your gene in the chromosome, and other fun stuff
- calculate extinction coefficients, Tm's, and base composition for your DNA or RNA; calculate amino acid composition and extinction coefficient for your protein
- table with links to properties/sequences of pET vectors
- note: slow to load
- UCSF mass spec site to search fragments, etc. to identify your protein
mFold by Michael Zuker.
- This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies.
More good stuff on the Synthetic Biology:Tools page.
Also see Science Web Resources.
Companies
MIT Links
MIT Biology department website
- Login required
- Certificate required
- can also get to Sciquest from here and order from GE Healthcare (formerly Amersham), PerkinElmer, Qiagen, Roche Applied Science, USA Scientific, Newark InOne, Sigma-Aldrich, Invitrogen (coming soon) using your MIT account number instead of a credit card.
- For instructions on how to use ECAT, see the FAQs page.
- Purchase orders, requisitions, etc. Certificate required.
- DNA sequencing, mass spectrometry, protein sequencing, peptide synthesis.
