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{{Template:}}
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__TOC__
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Welcome to DeoxyriboNucleicAwesome's BIOMOD Wiki!
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{{Template:}}
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[[Image:Example.jpg]]
 
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[[Image:.jpg|thumb|right]]
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----
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Jon Sack, Ph.D.
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<pre>
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[[Image:whatever.png]]
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</pre>
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==Research interests==
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COMPOSITE MATERIALS [PMC] IN BONE GRAFTING SUBSTITUTES.
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In this research, natural fibers like Sisal (Agave sisalana), Banana (Musa sepientum) & Roselle (Hibiscus sabdariffa), Sisal and banana (hybrid), Roselle and banana (hybrid) and Roselle and sisal (hybrid) are fabricated with bio epoxy resin using molding method. In this work, impact strength of Sisal and banana (hybrid), Roselle and banana (hybrid and Roselle and sisal (hybrid) composite at dry and wet conditions were studied. Impact test were conducted izod impact testing machine. In this work micro structure of the specimens are scanned by the Scanning Electron Microscope.
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== My Test of OpenWetWare Editing ==
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I would like to try the following editing tasks:
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* Add a [hyperlink](https://uk.yahoo.com/?ilc=400).
 +
** For example: Link to the paper can be found HERE[http://www.nature.com/nature/journal/v403/n6767/pdf/403339a0.pdf].
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* Add a document or Dropbox link:
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** Addition of document: [[Image:Example.jpg]]
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** Addition of Dropbox link: The file can be downloaded from Dropbox via this [LINK]
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* Cite a paper.
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** Hopefully see the list of references at the bottom of the page.
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** This is a really interesting study <ref>Reference goes here</ref>
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* Add a picture.
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I also invested heavily in Myspace, and lost most of my life savings.
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== References ==
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{{Reflist}}
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----
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{{scroll box|width=75%|text=
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'''EmbryoName HK023- chicken embryo- Stage 19.5 - 8.12.14'''
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<dpl>
 
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category=SL-Coding
 
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mode = unordered
 
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order = descending
 
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</dpl>
 
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}}
 
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==Education==
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==Experiment==
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<!--Include info about your educational background-->
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* Ph.D., Stanford University, Department of Biological Sciences
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* B.A., Reed College, Biochemistry
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==Institutional Affiliation==
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'''Objective'''
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To transform HB101s with a plasmid encoding GFP (called pGFP) and express this protein by inducing with arabinose. Testing out openwetware
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'''Procedure'''
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Assistant Professor
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* Trigeminal nerve bilaterally DiO crystals
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* 7th/8th nerve bilaterally DiI crystals (Big chunk on 7th nerve on L side and big chunk on 8th on R side)
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Department of Physiology & Membrane Biology
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'''Notes'''
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No obvious contamination, purposelly put a greater chunk of dye on the 7th nerve on the L side and the 8th nerve on the R side so will see if there is any visible difference between the amount of neurons labelled in different positions within the rhombomere.
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School of Medicine
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==Files==
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University of California
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*
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*
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*
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*
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4126 Tupper Hall
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*
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**
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**
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One Shields Avenue
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==Results==
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Davis, California 95616
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===Facial===
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(Green)
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530.752.4131 tel
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* '''''Afferents'''''
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530.752.5314 lab tel
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530.752.5423 fax
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jsack@ucdavis.edu
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* '''''Efferents'''''
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==Math Practice==
 
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''x''<sup>2</sup>+''y''<sup>2</sup>=''z''<sup>2</sup>
 
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{{math|''x''<sup>2</sup>+''y''<sup>2</sup>{{=}}''z''<sup>2</sup>}}
 
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<math>x^2+y^2=z^2</math>
 
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&sum;i=∞
 
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<math>e^{\pi i} + 1 = 0</math>
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===VIII ===
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(green)
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<math>\frac{\sqrt{2\alpha_1+e^2}}{\log \alpha_2}</math>
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* '''''Afferents'''''
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==Google Docs==
 
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{{#widget:Google Document
 
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|id=19hEjXbw_pwVjY5vwu-hQGfqpLTuwWQemRzEsCvJw640
 
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}}
 
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<html>
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<div id="car" style="width:100%; color:#SAFRDA;">
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* '''''Efferents'''''
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hai
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</div>
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</html>
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* '''''Other'''''
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===Basal plate ===
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(red)
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==Summary==
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'''Questions'''
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'''Future'''
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<META HTTP-EQUIV="refresh" CONTENT="10;URL=http://my.newplace.com/">
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Mary {pad|4em} had a little lamb.
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'''Badrul Arefin'''
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# Jeong M^, {{spaces|7}} <u>Sun D^</u>, Luo M^, Huang Y, Challen GA, <u>Rodriguez B</u>, Zhang X, Chavez L, Wang H, Hannah R, Kim S, Yang L, Ko M, Chen R, Gottgens B, Lee JS, Gunaratne P, Godley LA, Darlington GJ, Rao A, <u>Li W*</u>, Goodell MA*: Large conserved domains of low DNA methylation maintained by Dnmt3a. <br/> '''''          Nature Genetics''''' . Accepted.
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# <u>Akdemir KC</u>, Jain AK, Alton K, Arronow B, J. CA, ..., <u>Li W*</u>, Barton MC*: Genome Wide Profiling Reveals Stimulus-specific Functions of p53 During Differentiation and DNA Damage of Human Embryonic Stem Cells. <br/>'''''Nucleic Acids Res.''''' Accepted
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# Klein JB, Piao L, …, <u>Li W</u>, Shi X, Kutateladze TG: KDM5B demethylase binds to its histone target and the product through distinct modules.<br/>''Cell Reports''. Accepted. <br/><br/>'''2013''' <br/><br/>
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# <u>Chen K</u>, <u>Xi Y</u>, Pan X, Dent S, He X, <u>Li W*</u>: DANPOS: Dynamic Analysis of Nucleosome Position and Occupancy by Sequencing. <br/>'''''Genome Res.''''' 23 (2013) 341-351. [http://www.bcm.edu/news/item.cfm?newsID=6723 BCM News]; [http://epigenie.com/danpos-reveals-dynamic-nucleosomes Epigenie Headline]  <br/><br/>
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# <u>Wang L</u>, <u>Park JH</u>, Wang S, Kocher JP, <u>Li W*</u>: CPAT: Coding-Potential Assessment Tool Using an Alignment-Free Logistic Regression Model. <br/>'''''Nucleic Acids Res.''''' 41 (2013) e74.<br/><br/>
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# <u>Lin X</u>, <u>Sun D</u>, <u>Rodriguez B</u>, Zhao Q, Sun H, Zhang Y, <u>Li W*</u>: BseQC: Quality Control of bisulfite sequencing experiments. <br/>'''''Bioinformatics''''' 29 (2013) 3227-3229. PMCID: PMC3842756 .<br/><br/>
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# <u>Chen K^</u>, Wilson MA^, Hirsch C, Watson A, Liang S, Lu Y, <u>Li W*</u>, Dent S*: Stabilization of the Promoter Nucleosomes in Nucleosome Free Region by the Yeast Ssn6-Tup1 Corepressor. <br/>'''''Genome Res.''''' 23 (2013) 312-322. <br/><br/>

Current revision

Contents



My Test of OpenWetWare Editing

I would like to try the following editing tasks:

  • Add a [hyperlink](https://uk.yahoo.com/?ilc=400).
    • For example: Link to the paper can be found HERE[1].
  • Add a document or Dropbox link:
    • Addition of document: Image:Example.jpg
    • Addition of Dropbox link: The file can be downloaded from Dropbox via this [LINK]
  • Cite a paper.
    • Hopefully see the list of references at the bottom of the page.
    • This is a really interesting study <ref>Reference goes here</ref>
  • Add a picture.

References

Unknown extension tag "references"

EmbryoName HK023- chicken embryo- Stage 19.5 - 8.12.14


Experiment

Objective To transform HB101s with a plasmid encoding GFP (called pGFP) and express this protein by inducing with arabinose. Testing out openwetware Procedure

  • Trigeminal nerve bilaterally DiO crystals
  • 7th/8th nerve bilaterally DiI crystals (Big chunk on 7th nerve on L side and big chunk on 8th on R side)

Notes No obvious contamination, purposelly put a greater chunk of dye on the 7th nerve on the L side and the 8th nerve on the R side so will see if there is any visible difference between the amount of neurons labelled in different positions within the rhombomere.

Files

Results

Facial

(Green)

  • Afferents


  • Efferents




VIII

(green)

  • Afferents


  • Efferents


  • Other


Basal plate

(red)


Summary

Questions

Future


<META HTTP-EQUIV="refresh" CONTENT="10;URL=http://my.newplace.com/">


Mary {pad|4em} had a little lamb.

Badrul Arefin


  1. Jeong M^, Template:Spaces Sun D^, Luo M^, Huang Y, Challen GA, Rodriguez B, Zhang X, Chavez L, Wang H, Hannah R, Kim S, Yang L, Ko M, Chen R, Gottgens B, Lee JS, Gunaratne P, Godley LA, Darlington GJ, Rao A, Li W*, Goodell MA*: Large conserved domains of low DNA methylation maintained by Dnmt3a.
    Nature Genetics . Accepted.
  2. Akdemir KC, Jain AK, Alton K, Arronow B, J. CA, ..., Li W*, Barton MC*: Genome Wide Profiling Reveals Stimulus-specific Functions of p53 During Differentiation and DNA Damage of Human Embryonic Stem Cells.
    Nucleic Acids Res. Accepted
  3. Klein JB, Piao L, …, Li W, Shi X, Kutateladze TG: KDM5B demethylase binds to its histone target and the product through distinct modules.
    Cell Reports. Accepted.

    2013

  4. Chen K, Xi Y, Pan X, Dent S, He X, Li W*: DANPOS: Dynamic Analysis of Nucleosome Position and Occupancy by Sequencing.
    Genome Res. 23 (2013) 341-351. BCM News; Epigenie Headline

  5. Wang L, Park JH, Wang S, Kocher JP, Li W*: CPAT: Coding-Potential Assessment Tool Using an Alignment-Free Logistic Regression Model.
    Nucleic Acids Res. 41 (2013) e74.

  6. Lin X, Sun D, Rodriguez B, Zhao Q, Sun H, Zhang Y, Li W*: BseQC: Quality Control of bisulfite sequencing experiments.
    Bioinformatics 29 (2013) 3227-3229. PMCID: PMC3842756 .

  7. Chen K^, Wilson MA^, Hirsch C, Watson A, Liang S, Lu Y, Li W*, Dent S*: Stabilization of the Promoter Nucleosomes in Nucleosome Free Region by the Yeast Ssn6-Tup1 Corepressor.
    Genome Res. 23 (2013) 312-322.

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