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<html>
__TOC__
<head>
<link href='http://fonts.googleapis.com/css?family=Open+Sans'
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.OWWNBcpCurrentDateFilled {
== My Test of OpenWetWare Editing ==
display: none;
I would like to try the following editing tasks:
}
* Add a [hyperlink](https://uk.yahoo.com/?ilc=400).
** For example: Link to the paper can be found HERE[http://www.nature.com/nature/journal/v403/n6767/pdf/403339a0.pdf].
* Add a document or Dropbox link:
** Addition of document: [[Image:Example.jpg]]
** Addition of Dropbox link: The file can be downloaded from Dropbox via this [LINK]
* Cite a paper.
** Hopefully see the list of references at the bottom of the page.
** This is a really interesting study <ref>Reference goes here</ref>
* Add a picture.


#content {
== References ==
width: 0px;
{{Reflist}}
margin: 0 auto auto 0;
padding: 0em 0em 0em 0em;
align: center;
}


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----
float: left;
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border-left: 1px solid #00aeef;
border-right: 1px solid #00aeef;
width: 984px;
/* border-left: 1px solid #888; */
/* border-right: 1px solid #888; */
/* background-color: #fff; */
}


.firstHeading {
'''EmbryoName HK023- chicken embryo- Stage 19.5 - 8.12.14'''
display: none;
width: 0px;
}


#globalWrapper {
width: 984px;
/* background-color: #ffffff; */
margin-left: auto;
margin-right: auto
}


#column-one {
==Experiment==
display: none;
width: 0px;
/* background-color: #ffffff; */
}


#content {
'''Objective'''
margin: 0 0 0 0;
To transform HB101s with a plasmid encoding GFP (called pGFP) and express this protein by inducing with arabinose. Testing out openwetware
align: center;
'''Procedure'''
padding: 12px;
width: 960px;
/* background-color: #fff; */
border: 0;
}


#bodyContent {
* Trigeminal nerve bilaterally DiO crystals
width: 960px;
* 7th/8th nerve bilaterally DiI crystals (Big chunk on 7th nerve on L side and big chunk on 8th on R side)
align: center;
margin: 5px;
/* background-color: #fff; */
}


#footer {
'''Notes'''
/* display: none; */
No obvious contamination, purposelly put a greater chunk of dye on the 7th nerve on the L side and the 8th nerve on the R side so will see if there is any visible difference between the amount of neurons labelled in different positions within the rhombomere.
position: center;
width: 960px;
background-color: #222;
border-top: 2px solid #d13f31;
}


/*
==Files==
@media screen {
body {
background: #ffffff
url()
repeat;
}
}
*/
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<style>
*  
/*
*  
* {
*  
text-shadow: 0px 1px 1px #222;
*  
}
*/
#bodyContent,#column-content,#content {
/* background: #fff; */
/*url()
repeat; */
}


#bodyContent,#column-content,#content {
*
/* background: #fff; */
** abd dfg
**
}


#header {
==Results==
width: 100%;
height: 150px;
/*
background:
url()
no-repeat; */
background-size: 100% auto;
margin-bottom: 0px;
padding: 0px 0px 0px 0px;
/*  border-bottom: 1px solid #DEDEDE; */
}


#menu {
===Facial===
display: block;
(Green)
width: 100%;
padding: 0px;
/* background-color: #003e5c; */
border: 2px solid #009ee0;
margin-bottom: 15px;
}


ul.menu li a {
* '''''Afferents'''''
display: block;
 
/*  border: 1px solid #474655; */
padding: 6px 10px;
text-decoration: none;
/* color: #333; */
color: #fff;
/*  width: 121px;  */
margin: 0px;
text-align: center;
font-size: large;
}


ul.menu li a:hover {
* '''''Efferents'''''
color: #009ee0;
}


ul.menu {
/*display: none; */
/* position: absolute; */
height: 40px;
margin: 0;
padding: 0;
list-style: none;
float: center;
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/* display:inline; */
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/* border: 2px solid #009ee0; */
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border-bottom: 2px solid #009ee0;
border-right: 2px solid #009ee0;
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ul.submenu li {
float: none;
margin: 0px;
}


ul.submenu li a {
===VIII ===
text-align: left;
(green)
margin: 0px;
/* width: 120px; */
padding: 0 0 0 12px;
color: white;
text-decoration: none;
font-size: large
}


ul.submenu li a:hover {
* '''''Afferents'''''
color: #009ee0;
/* text-decoration: underline; */
}


.thumb {
border-image: /* url() */ repeat;
}


.mytable {
border-image: /* url() */ repeat;
}
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</head>
<body>
<div id="header"></div>


<div id="menu">
* '''''Efferents'''''
<ul class="menu">
<li class="motives"><a
href="/wiki/Biomod/2013/Aarhus/Nano_Creators:Lorem_ipsum">Lorem
Ipsum</a></li>
<!-- <li class="design"><a href="/wiki/Biomod/2013/Aarhus/Function">Lorem Ipsum</a></li> -->
<li class="result"><a href="/wiki/Biomod/2013/Aarhus/Assembly">Lorem
Ipsum & Lorem Ipsum</a>
<ul class="submenu">
<li><a
href="/wiki/Biomod/2013/Aarhus/Assembly#Assembly_of_the_DNA_Shell">Lorem
Ipsum</a></li>
<li><a
href="/wiki/Biomod/2013/Aarhus/Assembly#Capturing_ability">Lorem
Ipsum</a></li>
<li><a
href="/wiki/Biomod/2013/Aarhus/Assembly#Immobilizing_on_microfluidic_device">Lorem
Ipsum</a></li>
<li><a
href="/wiki/Biomod/2013/Aarhus/Assembly#Supporting_Enzyme">Lorem
Ipsum</a></li>
</ul></li>
<li class="method"><a href="/wiki/Biomod/2013/Aarhus/Method">Lorem
Ipsum</a></li>
<li class="futurework"><a
href="/wiki/Biomod/2013/Aarhus/FutureWork">Lorem Ipsum</a></li>
<li class="team"><a href="/wiki/Biomod/2013/Aarhus/Team">Lorem
Ipsum</a></li>
<li class="acknowledgement"><a
href="/wiki/Biomod/2013/Aarhus/Acknowledgement">Lorem Ipsum</a></li>
</ul>
</div>
<div id="bodyContent">
Nec ut paulo labitur euripidis. Ut vix iriure omnesque delicata, ne nec omnes feugait perpetua. Quidam nostrum nec ex, mea ne ullum dissentiet. Te reprimique disputando vis, etiam consul nusquam mea ut, per ne epicurei facilisi.


Ei duo quas torquatos vulputate. Ipsum delenit atomorum usu eu, ne vidit scripta sit. Cum te integre sensibus percipitur, ne duo mucius graeci. Ex cum sumo iisque, pro ludus soluta intellegebat no. Labore diceret constituto vix ei.


His ex tritani alienum, mea ei etiam phaedrum. Ne mea epicurei gubergren liberavisse, stet omnesque cotidieque no has. Cu sit solum recusabo reprehendunt, dicam utroque apeirian id duo. Et ceteros invenire sensibus pri. Eam perpetua facilisis dissentiunt cu, eum quando verear at. Ea qui veniam dolorem, praesent sadipscing ei sea.
* '''''Other'''''


Utinam instructior duo te. Te eleifend deterruisset eos, tale clita congue ad ius. Ea eos accusam omittam, cum ea autem ludus zril, quo eligendi imperdiet te. Ei usu lorem falli aliquip, alterum qualisque no nec. Eum ei modo facer.


Eu accusata maluisset eos, vis nibh habeo delectus ne. Has vero vitae explicari te. Prima choro sensibus eos at, has te inani eruditi lucilius, duo iuvaret verterem id. Qui ex cibo consetetur, vis eu sumo legere verear.


Cum et feugiat appetere democritum, sea erat partem recusabo te. Ubique recteque vix ut, ei tale error nam. Suas perpetua et eam, an ullum minim cum. Eos ut diam postea alienum, no eam ignota primis lucilius. Idque aliquip sadipscing nec ei, ut pri nemore iuvaret hendrerit.
===Basal plate ===
(red)


Mel liber facete no, in saepe suscipiantur duo. Est te placerat aliquando. Duo odio commodo recteque ex. Quando inimicus in pro, ad usu legendos definiebas, an sint definiebas mei. Mel liber persecuti ad.


Eius suscipit id nec, eam commune eligendi te. Ei pro corpora mentitum. Ea possit melius sit, id idque salutatus usu. Nec ei mucius minimum omittantur, qui option utamur te.
==Summary==


Vel no unum electram, no vis tollit nonumy sadipscing. Eu natum fabulas sit. An stet quaestio sea, ad malis maiestatis duo, sea eu vocent officiis. Ne tacimates perpetua his, eam dicta maiorum at.
'''Questions'''


An vis enim nulla, dolore nemore quaestio duo ex. Ut has congue everti omittantur, te vix omnesque tacimates. Per oratio omnesque et, ei vel esse tibique omnesque. Te vix nulla laudem liberavisse. Nec at cetero admodum.
'''Future'''


Ut facer inani eum, vel te etiam vocibus omittam. Ubique offendit instructior cum an. Mel dicam omnium ocurreret ea, omnium dolorum eleifend duo ne, et mei dictas phaedrum. An paulo soluta mnesarchum vim, nam ad dicta iriure maiorum. Velit commodo antiopam ad mei, id qui erant mundi. Eos in graeci minimum, ea quo minim prompta, nam alia iusto ea.


Ad error doming sed, eu tale fugit vix. Viris everti et vis, ea vix quot veri sensibus. Vel no mazim laudem detraxit. Cu quo repudiare euripidis, eos suas labore ad.
<META HTTP-EQUIV="refresh" CONTENT="10;URL=http://my.newplace.com/">


Omittam accommodare quo ut. No his clita luptatum. Alii ipsum iusto sed no. Dolorem salutatus ea pri.


Docendi placerat theophrastus in sea, mei et impetus iracundia interpretaris. Eam ut ignota audiam graecis. Eum id rebum dolores definitiones. Cu nisl decore duo, posse nostro sed in, ex sit posse atqui detraxit. Assentior referrentur ut nec, ad nam libris omnium disputationi. Cu sit nisl minimum tincidunt, in voluptua assentior complectitur quo.
Mary {pad|4em} had a little lamb.


Eu quo regione adipiscing complectitur. Duo in prompta scripserit, id vide detracto contentiones eum. Nonumy percipit his ex, ius veniam vivendo ei, ea atqui animal sapientem vis. Hinc nihil vix id, dolore ornatus pro no, pri odio possim elaboraret eu. Purto iuvaret quo cu.
'''Badrul Arefin'''


Stet illud graece eam eu, no assum paulo iriure est. Cu nonumy veritus sea, vix magna illud at. Ad aeque sensibus pri. Ne usu elit everti apeirian, ad erant postea impedit sed. Et nibh prodesset pro.


Has ex graeci corrumpit, omnes theophrastus at his, modus equidem elaboraret te pro. Cum at ferri dicam noluisse. Noluisse assueverit sea ut. Qui te postea scribentur. Ei eius solet duo. Etiam reprimique duo id, ne sit graeco prodesset, eum in ferri detracto legendos.
# Jeong M^, {{spaces|7}} <u>Sun D^</u>, Luo M^, Huang Y, Challen GA, <u>Rodriguez B</u>, Zhang X, Chavez L, Wang H, Hannah R, Kim S, Yang L, Ko M, Chen R, Gottgens B, Lee JS, Gunaratne P, Godley LA, Darlington GJ, Rao A, <u>Li W*</u>, Goodell MA*: Large conserved domains of low DNA methylation maintained by Dnmt3a. <br/> '''''          Nature Genetics''''' . Accepted.
 
# <u>Akdemir KC</u>, Jain AK, Alton K, Arronow B, J. CA, ..., <u>Li W*</u>, Barton MC*: Genome Wide Profiling Reveals Stimulus-specific Functions of p53 During Differentiation and DNA Damage of Human Embryonic Stem Cells. <br/>'''''Nucleic Acids Res.''''' Accepted
His ex saperet facilisis deterruisset. Ne mazim meliore suscipiantur duo, facilisi consetetur cum in. Ad mei erat mediocrem sapientem, regione utroque delectus mel ad, ei possit recteque nam. An mel delenit ceteros, ad labore commodo convenire est, an vel eirmod diceret indoctum.
# Klein JB, Piao L, …, <u>Li W</u>, Shi X, Kutateladze TG: KDM5B demethylase binds to its histone target and the product through distinct modules.<br/>''Cell Reports''. Accepted. <br/><br/>'''2013''' <br/><br/>
 
# <u>Chen K</u>, <u>Xi Y</u>, Pan X, Dent S, He X, <u>Li W*</u>: DANPOS: Dynamic Analysis of Nucleosome Position and Occupancy by Sequencing. <br/>'''''Genome Res.''''' 23 (2013) 341-351. [http://www.bcm.edu/news/item.cfm?newsID=6723 BCM News];  [http://epigenie.com/danpos-reveals-dynamic-nucleosomes Epigenie Headline]  <br/><br/>
Usu cu possit volutpat disputando, ad pro omnesque repudiare. Quo discere noluisse mediocritatem te. Vis vero nemore rationibus id. In est probo alienum, ne mei purto nonumy virtute. Eum primis inciderint ut, causae omittantur mel no, sea ei dicta recusabo repudiare.
# <u>Wang L</u>, <u>Park JH</u>, Wang S, Kocher JP, <u>Li W*</u>: CPAT: Coding-Potential Assessment Tool Using an Alignment-Free Logistic Regression Model. <br/>'''''Nucleic Acids Res.''''' 41 (2013) e74.<br/><br/>
 
# <u>Lin X</u>, <u>Sun D</u>, <u>Rodriguez B</u>, Zhao Q, Sun H, Zhang Y, <u>Li W*</u>: BseQC: Quality Control of bisulfite sequencing experiments. <br/>'''''Bioinformatics''''' 29 (2013) 3227-3229. PMCID: PMC3842756 .<br/><br/>
Illum tation et has, mea ei vulputate interesset. Ne nonumy dictas mea, nec ei duis voluptua. His eu doctus temporibus, iuvaret molestie et est. Ridens persequeris vim at, pri omnesque offendit antiopam et.
# <u>Chen K^</u>, Wilson MA^, Hirsch C, Watson A, Liang S, Lu Y, <u>Li W*</u>, Dent S*: Stabilization of the Promoter Nucleosomes in Nucleosome Free Region by the Yeast Ssn6-Tup1 Corepressor. <br/>'''''Genome Res.''''' 23 (2013) 312-322. <br/><br/>
</div>
<div id="footer">
footer
</div>
 
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Revision as of 21:58, 6 March 2016


My Test of OpenWetWare Editing

I would like to try the following editing tasks:

  • Add a [hyperlink](https://uk.yahoo.com/?ilc=400).
    • For example: Link to the paper can be found HERE[1].
  • Add a document or Dropbox link:
    • Addition of document:
    • Addition of Dropbox link: The file can be downloaded from Dropbox via this [LINK]
  • Cite a paper.
    • Hopefully see the list of references at the bottom of the page.
    • This is a really interesting study [1]
  • Add a picture.

References

  1. ↑ Reference goes here

EmbryoName HK023- chicken embryo- Stage 19.5 - 8.12.14


Experiment

Objective To transform HB101s with a plasmid encoding GFP (called pGFP) and express this protein by inducing with arabinose. Testing out openwetware Procedure

  • Trigeminal nerve bilaterally DiO crystals
  • 7th/8th nerve bilaterally DiI crystals (Big chunk on 7th nerve on L side and big chunk on 8th on R side)

Notes No obvious contamination, purposelly put a greater chunk of dye on the 7th nerve on the L side and the 8th nerve on the R side so will see if there is any visible difference between the amount of neurons labelled in different positions within the rhombomere.

Files

    • abd dfg

Results

Facial

(Green)

  • Afferents


  • Efferents




VIII

(green)

  • Afferents


  • Efferents


  • Other


Basal plate

(red)


Summary

Questions

Future


<META HTTP-EQUIV="refresh" CONTENT="10;URL=http://my.newplace.com/">


Mary {pad|4em} had a little lamb.

Badrul Arefin


  1. Jeong M^, Template:Spaces Sun D^, Luo M^, Huang Y, Challen GA, Rodriguez B, Zhang X, Chavez L, Wang H, Hannah R, Kim S, Yang L, Ko M, Chen R, Gottgens B, Lee JS, Gunaratne P, Godley LA, Darlington GJ, Rao A, Li W*, Goodell MA*: Large conserved domains of low DNA methylation maintained by Dnmt3a.
    Nature Genetics . Accepted.
  2. Akdemir KC, Jain AK, Alton K, Arronow B, J. CA, ..., Li W*, Barton MC*: Genome Wide Profiling Reveals Stimulus-specific Functions of p53 During Differentiation and DNA Damage of Human Embryonic Stem Cells.
    Nucleic Acids Res. Accepted
  3. Klein JB, Piao L, …, Li W, Shi X, Kutateladze TG: KDM5B demethylase binds to its histone target and the product through distinct modules.
    Cell Reports. Accepted.

    2013

  4. Chen K, Xi Y, Pan X, Dent S, He X, Li W*: DANPOS: Dynamic Analysis of Nucleosome Position and Occupancy by Sequencing.
    Genome Res. 23 (2013) 341-351. BCM News; Epigenie Headline

  5. Wang L, Park JH, Wang S, Kocher JP, Li W*: CPAT: Coding-Potential Assessment Tool Using an Alignment-Free Logistic Regression Model.
    Nucleic Acids Res. 41 (2013) e74.

  6. Lin X, Sun D, Rodriguez B, Zhao Q, Sun H, Zhang Y, Li W*: BseQC: Quality Control of bisulfite sequencing experiments.
    Bioinformatics 29 (2013) 3227-3229. PMCID: PMC3842756 .

  7. Chen K^, Wilson MA^, Hirsch C, Watson A, Liang S, Lu Y, Li W*, Dent S*: Stabilization of the Promoter Nucleosomes in Nucleosome Free Region by the Yeast Ssn6-Tup1 Corepressor.
    Genome Res. 23 (2013) 312-322.

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