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<div style="padding: 10px; color: #000000; background-color: #444444;">
Mary {pad|4em} had a little lamb.
<center>
[[Image:Xray_logo1.png|200px]]
</center>
</div><div style="padding: 10px; color: #000000; background-color: #444444;">
<center>
[[IGEM:Cambridge/2008| <font face="verdana" style="color:#ffffff"> '''Home''' </font>]] &nbsp;
[[iGEM:Cambridge/2008/Notebook/Turing_Pattern_Formation| <font face="verdana" style="color:#b3c6fe"> '''Signalling''' </font>]]&nbsp;
[[IGEM:Cambridge/2008/Notebook/Bacillus| <font face="verdana" style="color:#b3c6fe"> '''Bacillus''' </font>]]&nbsp;
[[iGEM:Cambridge/2008/Notebook/Voltage| <font face="verdana" style="color:#b3c6fe"> '''Voltage'''
</font>]]&nbsp;
[[iGEM:Cambridge/2008/Notebook/Modelling| <font face="verdana" style="color:#b3c6fe"> '''Modelling''' </font>]]&nbsp;
[[IGEM:Cambridge/2008/Protocols| <font face="verdana" style="color:#ffffff"> '''Protocols''' </font>]]&nbsp;
[[IGEM:Cambridge/2008/Members| <font face="verdana" style="color:#ffffff"> '''People''' </font>]]&nbsp;
</center>
</div>


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<title>Extracted BioBrick Parts</title>
</head>


<body>
# Jeong M^, {{spaces|7}} <u>Sun D^</u>, Luo M^, Huang Y, Challen GA, <u>Rodriguez B</u>, Zhang X, Chavez L, Wang H, Hannah R, Kim S, Yang L, Ko M, Chen R, Gottgens B, Lee JS, Gunaratne P, Godley LA, Darlington GJ, Rao A, <u>Li W*</u>, Goodell MA*: Large conserved domains of low DNA methylation maintained by Dnmt3a. <br/> '''''           Nature Genetics''''' . Accepted.
<!--[if !excel]>&nbsp;&nbsp;<![endif]-->
# <u>Akdemir KC</u>, Jain AK, Alton K, Arronow B, J. CA, ..., <u>Li W*</u>, Barton MC*: Genome Wide Profiling Reveals Stimulus-specific Functions of p53 During Differentiation and DNA Damage of Human Embryonic Stem Cells. <br/>'''''Nucleic Acids Res.''''' Accepted
<!--The following information was generated by Microsoft Office Excel's Publish
# Klein JB, Piao L, …, <u>Li W</u>, Shi X, Kutateladze TG: KDM5B demethylase binds to its histone target and the product through distinct modules.<br/>''Cell Reports''. Accepted. <br/><br/>'''2013''' <br/><br/>
as Web Page wizard.-->
# <u>Chen K</u>, <u>Xi Y</u>, Pan X, Dent S, He X, <u>Li W*</u>: DANPOS: Dynamic Analysis of Nucleosome Position and Occupancy by Sequencing. <br/>'''''Genome Res.''''' 23 (2013) 341-351. [http://www.bcm.edu/news/item.cfm?newsID=6723 BCM News];  [http://epigenie.com/danpos-reveals-dynamic-nucleosomes Epigenie Headline] <br/><br/>
<!--If the same item is republished from Excel, all information between the DIV
# <u>Wang L</u>, <u>Park JH</u>, Wang S, Kocher JP, <u>Li W*</u>: CPAT: Coding-Potential Assessment Tool Using an Alignment-Free Logistic Regression Model. <br/>'''''Nucleic Acids Res.''''' 41 (2013) e74.<br/><br/>
tags will be replaced.-->
# <u>Lin X</u>, <u>Sun D</u>, <u>Rodriguez B</u>, Zhao Q, Sun H, Zhang Y, <u>Li W*</u>: BseQC: Quality Control of bisulfite sequencing experiments. <br/>'''''Bioinformatics''''' 29 (2013) 3227-3229. PMCID: PMC3842756 .<br/><br/>
 
# <u>Chen K^</u>, Wilson MA^, Hirsch C, Watson A, Liang S, Lu Y, <u>Li W*</u>, Dent S*: Stabilization of the Promoter Nucleosomes in Nucleosome Free Region by the Yeast Ssn6-Tup1 Corepressor. <br/>'''''Genome Res.''''' 23 (2013) 312-322. <br/><br/>
<!----------------------------->
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<div id="Extracted parts_32375" align=center x:publishsource="Excel">
 
<h1 style='color:black;font-family:Arial;font-size:14.0pt;font-weight:800;
font-style:normal'>Extracted BioBrick Parts</h1>
 
<table x:str border=0 cellpadding=0 cellspacing=0 width=708 style='border-collapse:
collapse;table-layout:fixed;width:531pt'>
<col width=83 style='mso-width-source:userset;mso-width-alt:3035;width:62pt'>
<col width=437 style='mso-width-source:userset;mso-width-alt:15981;width:328pt'>
<col width=116 style='mso-width-source:userset;mso-width-alt:4242;width:87pt'>
<col width=72 style='mso-width-source:userset;mso-width-alt:2633;width:54pt'>
 
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2432375 width=83 style='height:12.75pt;width:62pt'>Part
  No</td>
  <td class=xl2532375 width=437 style='border-left:none;width:328pt'>Description</td>
  <td class=xl2532375 width=116 style='border-left:none;width:87pt'>Plasmid</td>
  <td class=xl2532375 width=72 style='border-left:none;width:54pt'>Resistance</td>
</tr>
<tr height=17 style='height:12.75pt'>
 
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>B1002</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>Stop</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1AK3</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>B1006</td>
 
  <td class=xl2632375 style='border-top:none;border-left:none'>Stop</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1AK3</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>J45995</td>
  <td class=xl2732375 style='border-top:none;border-left:none'>Stationary phase
  dependent GFP generator</td>
 
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1AT3</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>B0030</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>RBS strong</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1A2</td>
 
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>E0840</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>GFP</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1A2</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
 
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>J23114</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>Promoter</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>J61002</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
 
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>R0040</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>TetR repressible
  promoter</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1A2</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
 
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>J23113</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>Promoter</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>J61002</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>E0040</td>
 
  <td class=xl2632375 style='border-top:none;border-left:none'>GFP</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1A2</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>I732007</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>BgIII and BamHI</td>
 
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1A3</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>J37016</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>Lux R GFP</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1A2</td>
 
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>J23100</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>Promoter</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>J61002</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
 
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>J45996</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>Anti-OsmY GFP</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1AK3</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
 
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>H21001</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>I13522</td>
 
  <td class=xl2632375 style='border-top:none;border-left:none'>pTET GFP</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1A2 or J23006</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>I13522('07)</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pTET GFP</td>
 
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1A2 or J23006</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>C0012</td>
  <td class=xl2832375 style='border-top:none;border-left:none'>LacI repressor</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1A2</td>
 
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>I714062</td>
  <td class=xl2832375 style='border-top:none;border-left:none'><a
  href="http://partsregistry.org/Part:BBa%20I714062">GFP Stop</a></td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1A2</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
 
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>Q04121</td>
  <td class=xl2832375 style='border-top:none;border-left:none'><a
  href="http://partsregistry.org/Part:BBa%20Q04121">QPI</a></td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB2K3</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  </tr>
 
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>F1610</td>
  <td class=xl2832375 style='border-top:none;border-left:none'><a
  href="http://partsregistry.org/Part:BBa%20F1610">OHL sender</a></td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1AK3</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  </tr>
<tr height=17 style='height:12.75pt'>
 
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>J04630</td>
  <td class=xl2832375 style='border-top:none;border-left:none'><a
  href="http://partsregistry.org/Part:BBa%20J04630">GFP stop</a></td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1AK3</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>C0061</td>
 
  <td class=xl2832375 style='border-top:none;border-left:none'><a
  href="http://partsregistry.org/Part:BBa%20C0061">AHL synthase</a></td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1A2</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>B0014</td>
  <td class=xl2832375 style='border-top:none;border-left:none'><a
  href="http://partsregistry.org/Part:BBa%20B0014">Stop Stop</a></td>
 
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1AK3</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>I40630('07)</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
 
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>B0015</td>
  <td class=xl2832375 style='border-top:none;border-left:none'><a
  href="http://partsregistry.org/Part:BBa%20B0015">Stop</a></td>
  <td class=xl2632375 style='border-top:none;border-left:none'>pSB1AK3</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
 
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>I45250</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>&nbsp;</td>
 
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
 
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>pSB1AK3</td>
 
  <td class=xl2832375 style='border-top:none;border-left:none'><a
  href="http://partsregistry.org/Part:pSB1AK3">High copy number plasmid
  carrying ampicillin and kanamycin resistance</a></td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>pSB1A2</td>
  <td class=xl2832375 style='border-top:none;border-left:none'><a
  href="http://partsregistry.org/Part:pSB1A2">High copy number plasmid carrying
  ampicillin resistance.</a></td>
 
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>pSB1A3</td>
  <td class=xl2832375 style='border-top:none;border-left:none'><a
  href="http://partsregistry.org/Part:pSB1A3">high copy number plasmid carrying
  ampicillin resistance.</a></td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
 
</tr>
<tr height=17 style='height:12.75pt'>
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>pSB2K3</td>
  <td class=xl2832375 style='border-top:none;border-left:none'><a
  href="http://partsregistry.org/Part:pSB2K3">variable copy number plasmid
  carrying kanamycin resistance</a></td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
<tr height=17 style='height:12.75pt'>
 
  <td height=17 class=xl2632375 style='height:12.75pt;border-top:none'>J23006</td>
  <td class=xl2832375 style='border-top:none;border-left:none'><a
  href="http://partsregistry.org/Part:BBa%20J23006">Plaasmid which puts
  biobrick uder pTET</a></td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
  <td class=xl2632375 style='border-top:none;border-left:none'>&nbsp;</td>
</tr>
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  <td width=437 style='width:328pt'></td>
  <td width=116 style='width:87pt'></td>
  <td width=72 style='width:54pt'></td>
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Revision as of 20:24, 25 December 2013

Mary {pad|4em} had a little lamb.


  1. Jeong M^, Template:Spaces Sun D^, Luo M^, Huang Y, Challen GA, Rodriguez B, Zhang X, Chavez L, Wang H, Hannah R, Kim S, Yang L, Ko M, Chen R, Gottgens B, Lee JS, Gunaratne P, Godley LA, Darlington GJ, Rao A, Li W*, Goodell MA*: Large conserved domains of low DNA methylation maintained by Dnmt3a.
    Nature Genetics . Accepted.
  2. Akdemir KC, Jain AK, Alton K, Arronow B, J. CA, ..., Li W*, Barton MC*: Genome Wide Profiling Reveals Stimulus-specific Functions of p53 During Differentiation and DNA Damage of Human Embryonic Stem Cells.
    Nucleic Acids Res. Accepted
  3. Klein JB, Piao L, …, Li W, Shi X, Kutateladze TG: KDM5B demethylase binds to its histone target and the product through distinct modules.
    Cell Reports. Accepted.

    2013

  4. Chen K, Xi Y, Pan X, Dent S, He X, Li W*: DANPOS: Dynamic Analysis of Nucleosome Position and Occupancy by Sequencing.
    Genome Res. 23 (2013) 341-351. BCM News; Epigenie Headline

  5. Wang L, Park JH, Wang S, Kocher JP, Li W*: CPAT: Coding-Potential Assessment Tool Using an Alignment-Free Logistic Regression Model.
    Nucleic Acids Res. 41 (2013) e74.

  6. Lin X, Sun D, Rodriguez B, Zhao Q, Sun H, Zhang Y, Li W*: BseQC: Quality Control of bisulfite sequencing experiments.
    Bioinformatics 29 (2013) 3227-3229. PMCID: PMC3842756 .

  7. Chen K^, Wilson MA^, Hirsch C, Watson A, Liang S, Lu Y, Li W*, Dent S*: Stabilization of the Promoter Nucleosomes in Nucleosome Free Region by the Yeast Ssn6-Tup1 Corepressor.
    Genome Res. 23 (2013) 312-322.

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