SEED/2008/Day 3: Difference between revisions
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** B0034.E0040-F: gaattctctagagaaagaggagaaatactagatgcgtaaaggagaagaacttttc | ** B0034.E0040-F: gaattctctagagaaagaggagaaatactagatgcgtaaaggagaagaacttttc | ||
** B0035.E0040-F: gaattctctagagattaaagaggagaatactagatgcgtaaaggagaagaacttttc | ** B0035.E0040-F: gaattctctagagattaaagaggagaatactagatgcgtaaaggagaagaacttttc | ||
* Pairs of RBS primers to assign to groups (selected based on estimated strength): | |||
** B0030 & B0032 | |||
** B0031 & B0035 | |||
** B0033 & B0034 | |||
** B0032 & B0033 | |||
** B0031 & B0034 | |||
** B0030 & B0035 | |||
== Instructor Post-prep == | == Instructor Post-prep == | ||
* store minipreps/PCRs in freezer | * store minipreps/PCRs in freezer | ||
Revision as of 10:12, 26 February 2008
Morning
- miniprep pSB4A5 cultures (x2)
- Each group will do two minipreps
- elute in 30ul
- spec miniprep concentrations (over lunch, instructor)
Afternoon
- Set up 50ul PCRs with 2 different forward RBS primers
- 5ul 10x NovaTaq Buffer with MgCl2
- 1ul dNTP mix (10mM each dNTP)
- 1ul reverse primer (VR)
- 1ul RBS specific forward primer
- 0.25ul NovaTaq DNA polymerase
- 0.5ul DNA template of E0050 (10ng)
- rest PCR grade water
- Cycle 30 times
- 30s@94C
- 30s@55C
- 1m@72C
- Set up one 50ul digest of pSB4A5 with EcoRI and PstI
- 5ul NEB2
- 0.5ul BSA
- 2.5ug pSB4A5 miniprep
- 1ul EcoRI
- 1ul PstI
- leave in 37C incubator overnight
Lecture
- PCR discussion
- What is Synthetic Biology?
- Tie in Comic
- General, Very High Level Methods (Standardization, Abstraction, Encapsulation)
- General hierarchy (Parts, Devices, Systems)
- Rational Design from Ground Up
- Who is involved?
- Scientists, Engineers, Students, Hobbyists, Politicians
- Why should we care?
- Project Ideas Homework Discussion
- Environment, Energy, Medicine, Materials, Chemicals, Computing
- Understanding of Regulation, Function, Design (Minimal systems)
- What are you going to learn and do in this class?
- Cloning Process Overview
- Characterization
Instructor Preparation
- miniprep 1A3.E0050 (PCR template)
- grow up cultures of pSB4A5.I52001 (destination vector)
- Oligos
- VR: attaccgcctttgagtgagc
- B0030.E0040-F: gaattctctagagattaaagaggagaaatactagatgcgtaaaggagaagaacttttc
- B0031.E0040-F: gaattctctagagtcacacaggaaacctactagatgcgtaaaggagaagaacttttc
- B0032.E0040-F: gaattctctagagtcacacaggaaagtactagatgcgtaaaggagaagaacttttc
- B0033.E0040-F: gaattctctagagtcacacaggactactagatgcgtaaaggagaagaacttttc
- B0034.E0040-F: gaattctctagagaaagaggagaaatactagatgcgtaaaggagaagaacttttc
- B0035.E0040-F: gaattctctagagattaaagaggagaatactagatgcgtaaaggagaagaacttttc
- Pairs of RBS primers to assign to groups (selected based on estimated strength):
- B0030 & B0032
- B0031 & B0035
- B0033 & B0034
- B0032 & B0033
- B0031 & B0034
- B0030 & B0035
Instructor Post-prep
- store minipreps/PCRs in freezer
