SBB11Ntbk-SuhaniVora: Difference between revisions
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Today we set up PCR reactions for our promoter parts. <br> | Today we set up PCR reactions for our promoter parts. <br> | ||
-Resuspended oligos PmalK_R and SV_06 to 100 | -Resuspended oligos PmalK_R and SV_06 to 100 uM. <br> | ||
-Diluted primers to 10 | -Diluted primers to 10 uM. <br> | ||
-Set up PCR for cloning using Expand Polymerase <br> | -Set up PCR for cloning using Expand Polymerase <br> | ||
1. P_malk <br> | 1. P_malk <br> | ||
Line 12: | Line 12: | ||
3. P_rfaQ <br> | 3. P_rfaQ <br> | ||
Thermocycler Program: 2K55 <br> | Thermocycler Program: 2K55 <br> | ||
Construction Files: | |||
<pre> | |||
PCR ss61f/P_malKR on E. coli MG1655 gDNA (525 bp, EcoRI/BamHI) | |||
Sub into pBjh1601KC-Bca1144 (EcoRI/BamHI, 3131+910 bp, L) | |||
Product is pBjh1601KC-sbb1134 {P_malK} | |||
---------------------------------------------------------------- | |||
ss61f BglBrick basic part cloning of lamB promoter AAACCGAATTCATGAGATCTATGCGGATAATGCGAGGATGCGTGCACCTG | |||
P_malkR BglBrick basic part cloning of lamB promoter CTGATggatccACCTTCATGGATATCGAGATTG | |||
Part sbb1132 {P_nlpA} | |||
PCR ss58r/SV_06 on MG1655 gen. (542bp, EcoRI/BamHI) | |||
Sub into pBjh1601KC-Bca1144#5 (EcoRI/BamHI, 3131+910, L) | |||
Product is pBjh1601KC-sbb1132 {P_nlpA} | |||
------------------------------------------------------ | |||
ss58r Forward Cloning of P_nlpA aaaccGAATTCatgAGATCTgcttcccaataattgctctg | |||
SV_06 P_nlpAR (reverse cloning of P_nlpA BglBricks basic part) CTGATGGATCCCCGTAGATGATGTGTTGTCAG | |||
Part sbb1121 {P_rfaQ} | |||
PCR ss47r/ss47f on MG1655 gen. (1031bp, EcoRI/BamHI) | |||
Sub into pBjh1601KC-Bca1144#5 (EcoRI/BamHI, 3131+910, L) | |||
Product is pBjh1601KC-sbb1121 {P_rfaQ} | |||
------------------------------------------------------ | |||
ss47fReverse Cloning of P_rfaQ tttggGGATCCttttcagacaaaatagggatggtgtcctg | |||
ss47rForward Cloning of P_rfaQ aaaccGAATTCatgAGATCTattttacgtttatgtagcgccgcaatcagg | |||
</pre> | |||
==[[User:Suhani Vora|Suhani Vora]] 13:24, 17 February 2011 (EST)== | ==[[User:Suhani Vora|Suhani Vora]] 13:24, 17 February 2011 (EST)== |
Revision as of 12:03, 22 February 2011
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Suhani Vora 14:08, 15 February 2011 (EST)
Today we set up PCR reactions for our promoter parts.
-Resuspended oligos PmalK_R and SV_06 to 100 uM.
-Diluted primers to 10 uM.
-Set up PCR for cloning using Expand Polymerase
1. P_malk
2. P_nlpA
3. P_rfaQ
Thermocycler Program: 2K55
Construction Files:
PCR ss61f/P_malKR on E. coli MG1655 gDNA (525 bp, EcoRI/BamHI) Sub into pBjh1601KC-Bca1144 (EcoRI/BamHI, 3131+910 bp, L) Product is pBjh1601KC-sbb1134 {P_malK} ---------------------------------------------------------------- ss61f BglBrick basic part cloning of lamB promoter AAACCGAATTCATGAGATCTATGCGGATAATGCGAGGATGCGTGCACCTG P_malkR BglBrick basic part cloning of lamB promoter CTGATggatccACCTTCATGGATATCGAGATTG Part sbb1132 {P_nlpA} PCR ss58r/SV_06 on MG1655 gen. (542bp, EcoRI/BamHI) Sub into pBjh1601KC-Bca1144#5 (EcoRI/BamHI, 3131+910, L) Product is pBjh1601KC-sbb1132 {P_nlpA} ------------------------------------------------------ ss58r Forward Cloning of P_nlpA aaaccGAATTCatgAGATCTgcttcccaataattgctctg SV_06 P_nlpAR (reverse cloning of P_nlpA BglBricks basic part) CTGATGGATCCCCGTAGATGATGTGTTGTCAG Part sbb1121 {P_rfaQ} PCR ss47r/ss47f on MG1655 gen. (1031bp, EcoRI/BamHI) Sub into pBjh1601KC-Bca1144#5 (EcoRI/BamHI, 3131+910, L) Product is pBjh1601KC-sbb1121 {P_rfaQ} ------------------------------------------------------ ss47fReverse Cloning of P_rfaQ tttggGGATCCttttcagacaaaatagggatggtgtcctg ss47rForward Cloning of P_rfaQ aaaccGAATTCatgAGATCTattttacgtttatgtagcgccgcaatcagg
Suhani Vora 13:24, 17 February 2011 (EST)
Ran PCR samples of P_malK, P_nlpA, P_rfaQ on analytical gel.
2ul Sample + 5 uL Loading Dye Buffer
Sample 1: P_malK (525 bp)
Sample 2: P_nlpA (542 bp)
Sample 3: P_rfaQ (1031 bp)
Cleaned with Zymo Cleanup : May have used wrong buffer
All PCR products for the class were thrown out, re-done by Prof. Anderson.
Suhani Vora 13:37, 22 February 2011 (EST)
P_nlpA PCR failed yesterday. Will have to move on without that part.
EcoRI/BamHI Digest of P_rfaQ (sbb1121) and P_malK (sbb1134)
Place in thermocycler at 37 deg for 1 hr.
Lane 3: sbb1121 (P_rfaQ) [1031 bp] Lane 4: sbb1134 (P_malK) [525 bp]