Registry of Standard Biological Models/Model Catalog

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Standard Biological Models Catalog

Regulator models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Regulator
Virtual BioBrick Regulator
 TetR <bbpart>J13211</bbpart> link link NO NO
Virtual BioBrick Regulator
Virtual BioBrick Regulator
 constitutive LuxR + pLuxR <bbpart>F2620</bbpart> link link NO YES tested in MC4100(M9) and DH5a(LB)
Virtual BioBrick Regulator
Virtual BioBrick Regulator
 LuxR under pLuxR control <bbpart>J37016</bbpart> link link NO YES tested in DH5a(LB)
Virtual BioBrick Regulator
Virtual BioBrick Regulator
 TBD <bbpart>other</bbpart> link link NO NO

Protein coding region models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
Virtual BioBrick Protein
 GFP <bbpart>E0040</bbpart> link link NO YES
Virtual BioBrick Environment
Virtual BioBrick Environment
 TBD <bbpart>other</bbpart> link link NO NO


Inverter models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
Virtual BioBrick Protein
 LacI based <bbpart>Q04121</bbpart> link link NO NO
Virtual BioBrick Protein
Virtual BioBrick Protein
 TetR based <bbpart>Q04400</bbpart> link link NO NO
Virtual BioBrick Protein
Virtual BioBrick Protein
 cI based <bbpart>Q04510</bbpart> link link NO NO
Virtual BioBrick Inverter
Virtual BioBrick Inverter
 TBD <bbpart>other</bbpart> link link NO NO

Composite part models

Type Description DNA part ID Card CellML File CellML Validated Experimentally Characterized Comments
Virtual BioBrick Protein
Virtual BioBrick Protein
 Ring Oscillator <bbpart>I5610</bbpart> link link NO NO
Virtual BioBrick Inverter
Virtual BioBrick Inverter
 Band Detector <bbpart>I20100</bbpart> link link NO NO
Virtual BioBrick Inverter
Virtual BioBrick Inverter
 TBD <bbpart>other</bbpart> link link NO NO
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