Registry of Standard Biological Models/Basic Component Models
From OpenWetWare
Here is a list of basic components available in the DNA Registry, each link intends to illustrate different modeling approaches and CellML descriptions:
Environment | ||
Constitutive_Promoter |
Activated_Promoter |
Repressed_Promoter |
Promoter_RBS_Coupled |
Activated_Promoter_RBS_Coupled |
Repressed_Promoter_RBS_Coupled |
RBS |
mRNA |
Protein |
- attempt to fuse RBS and mRNA concepts together. it could show a more universal interface, equivalent to the promoter_RBS_coupled
- Gene expression modeling (using the IMPORT of the previously defined building blocks):
- mRNA and protein full dynamic modeling
- Constitutive_mRNA_Protein_Expression_Dynamic -> ConstitutivePromoter + mRNA + RBS + Protein
- Activated_mRNA_Protein_Expression_Dynamic -> ActivatedPromoter + mRNA + RBS + Protein
- Repressed_mRNA_Protein_Expression_Dynamic -> RepressedPromoter + mRNA + RBS + Protein
- Protein dynamic modeling using quasi steady state approx on mRNA
- Constitutive_Protein_Expression_Dynamic -> ConstitutivePromoter_RBS_Coupled + Protein
- Activated_Protein_Expression_Dynamic -> ActivatedPromoter_RBS_Coupled + Protein
- Repressed_Protein_Expression_Dynamic -> RepressedPromoter_RBS_Coupled + Protein
- mRNA and protein full dynamic modeling