Registry of Standard Biological Models/Basic Component Models

Here is a list of basic components available in the DNA Registry, each link intends to illustrate different modeling approaches and CellML descriptions:

• Building blocks:
  • Constitutive Promoter
  • Activated Promoter
  • Repressed Promoter
  • Ribosome binding site (RBS)
  • Promoter_RBS_Coupled
  • Activated_Promoter_RBS_Coupled
  • Repressed_Promoter_RBS_Coupled
  • mRNA
  • Protein

• attempt on fusing RBS and mRNA concepts together. it could show a more universal interface, equivalent to the promoter_RBS_coupled
  • RBS_mRNA

• Gene expression modeling:
  • mRNA_Protein_Dynamic
  • Quasi state on mRNA dynamic

• Inverter

• Oscillator