Quint Lab:papers of the month

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papers of the month

07/10

  • mq - Juenger et al.: Exploring genetic and expression differences between physiologically extreme ecotypes: comparative genomic hybridization and gene expression studies of Kas-1 and Tsu-1 accessions of Arabidopsis thaliana. Plant, Cell and Environment 33:1268
  • mq - Earley et al.: An endogenous F-box protein regulates ARGONAUTE1 in Arabidopsis thaliana. Silence online early
  • mq - Finet et al.: Parallel structural evolution of Auxin Response Factors in the angiosperms. Plant Journal online early

06/10

04/10

  • cd - Pauwels et al.: NINJA connects the co-repressor TOPLESS to jasmonate signalling Nature 464, 788-791
  • mq - Bomblies/Weigel: Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana. PLoS Genetics 6:e1000890
  • mq - Marin et al.: miR390, Arabidopsis TAS3 tasiRNAs, and Their AUXIN RESPONSE FACTOR Targets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth. Plant Cell online early
  • mq - Baudry et al.: F-Box Proteins FKF1 and LKP2 Act in Concert with ZEITLUPE to Control Arabidopsis Clock Progression. Plant Cell online early
  • mq - Soeno et al.: Auxin-biosynthesis inhibitors, identified by genomics-based approach, provide insights into auxin biosynthesis. Plant Cell Physiol. online early
  • mq - Laitinen/Weigel: Identification of a spontaneous frame shift mutation in a non-reference Arabidopsis thaliana accession using whole genome sequencing. Plant Phys online early

03/10

02/10

  • cd- Roudier et al.: Very-Long-Chain Fatty Acids Are Involved in Polar Auxin Transport and Developmental Patterning in Arabidopsis Plant Cell online early
  • cd- Eklund et al.: The Arabidopsis thaliana STYLISH1 Protein Acts as a Transcriptional Activator Regulating Auxin Biosynthesis Plant Cell online early
  • cd- Yi et al.: A basic helix-loop-helix transcription factor controls cell growth and size in root hairs. Nat Gen 2010
  • mq - Broekgaarden et al.: Intraspecific variation in herbivore community composition and transcriptional profiles in field-grown Brassica oleracea cultivars. Journal of Exp. Botany 61:807
  • mq - Ishikawa et al.: A major quantitative trait locus for increasing cadmiumspecific concentration in rice grain is located on the short arm of chromosome 7. Journal of Exp. Botany 61:923–934
  • mq - Proost et al.: PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants. Plant Cell 21:3718
  • mq - de Smet et al.: Bimodular auxin response controls organogenesis in Arabidopsis. PNAS online early
  • mq - Kang et al.: PDR-type ABC transporter mediates cellular uptake of the phytohormone abscisic acid. PNAS online early
  • mq - Lohmann et al.: SLOW MOTION Is Required for Within-Plant Auxin Homeostasis and Normal Timing of Lateral Organ Initiation at the Shoot Meristem in Arabidopsis. Plant Cell online early
  • mq - Middleton et al.: Mathematical Modelling of the Aux/IAA Negative Feedback Loop. Bull Math Biol. online early
  • mq - Das et al.: A composite transcriptional signature differentiates responses towards closely related herbicides in Arabidopsis thaliana and Brassica napus. Plant Mol Biol 72:545-556
  • mq - Vidal et al.: Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana. PNAS online early
  • mq - The International Brachypodium Initiative: Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 463:763
  • mq - Foxe and Wright: Signature of diversifying selection on members of the pentatricopeptide repeat protein family in Arabidopsis lyrata. Genetics 183:663
  • mq - Huang et al.: The earliest stages of adaptation in an experimental plant population: strong selection on QTLS for seed dormancy. Mol Ecol online early
  • mq - Zhao and Hasenstein: Physiological interactions of antiauxins with auxin in roots. J Plant Physiol online early
  • mq - Son et al.: In vitro and in vivo interaction of AtRma2 E3 ubiquitin ligase and auxin binding protein 1. Biochem Biophys Res Commun. online early
  • mq - Amoutzias et al.: Posttranslational regulation impacts the fate of duplicated genes. PNAS 107:2967
  • mq - Fraser et al.: Evidence for widespread adaptive evolution of gene expression in budding yeast. PNAS 107:2977
  • mq - Platt/Borevitz: The Scale of Population Structure in Arabidopsis thaliana. PLoS Genet 6:e1000843.
  • mq - Lim et al.: Auxin response factor 2 (ARF2) plays a major role in regulating auxin-mediated leaf longevity. J Exp Bot online early
  • mq - Ansell et al.: Population structure and historical biogeography of European Arabidopsis lyrata. Heredity online early

01/10

  • ku - Ossowski/Weigel/Lynch: The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana. Science 327:92-94
  • cd - Giakountis et al.: Distinct Patterns of Genetic Variation Alter Flowering Responses of Arabidopsis Accessions to Different Daylengths Plant Physiol. 2010;152 177-191
  • mq - Proost et al.: PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants Plant Cell online early
  • mq - Rutter et al.: SPONTANEOUS MUTATION PARAMETERS FOR ARABIDOPSIS THALIANA MEASURED IN THE WILD Evolution online early
  • mq - Jha et al.: Variation in salinity tolerance and shoot sodium accumulation in Arabidopsis ecotypes linked to differences in the natural expression levels of transporters involved in sodium transport Plant Cell Environment online early
  • mq - Joosen et al.: Germinator: A software package for high-throughput scoring and curve fitting of Arabidopsis seed germination Plant Journal online early
  • mq - Krecek et al.: The PIN-FORMED (PIN) protein family of auxin transporters Genome Biology online early
  • mq - Parry/Estelle: Complex regulation of the TIR1/AFB family of auxin receptors PNAS online early
  • mq - Kieffer/Kepinski: Defining auxin response contexts in plant development. Current Opinion Plant Biol 13:12-20]
  • mq - Kagale et al.: Genome-wide analysis of Ethylene responsive element binding factor-associated Amphiphilic Repression (EAR) motif-containing transcriptional regulators in Arabidopsis. Plant Phys online early
  • mq - Mustroph et al.: Cross-kingdom comparison of transcriptomic adjustments to low oxygen stress highlights conserved and plant-specific responses. Plant Phys online early
  • mq - Katori et al.: Dissecting the genetic control of natural variation in salt tolerance of Arabidopsis thaliana accessions. Journal Exp Bot online early

12/09

  • cd - Strader&/Beisner/Bartel: Silver Ions Increase Auxin Efflux Independently of Effects on Ethylene Response Plant Cell 21: 3585-3590
  • mq - Kieffer/Kepinski: Defining auxin response contexts in plant development. Current Opinion in Plant Biology 13:1
  • mq - Nishimura et al.: Structural Mechanism of Abscisic Acid Binding and Signaling by Dimeric PYR1. Science online early
  • mq - Santiago et al.: The abscisic acid receptor PYR1 in complex with abscisic acid. Nature 462:665-8
  • mq - Melcher et al.: A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors. Nature 462:602-8
  • mq - Miyazono et al.: Structural basis of abscisic acid signalling. Nature 462:609-14
  • mq - Yin et al.: Structural insights into the mechanism of abscisic acid signaling by PYL proteins. Nat Struct Mol Biol. 16:1230-6.
  • mq - Fujii et al.: In vitro reconstitution of an abscisic acid signalling pathway. Nature 462:660-4

11/09

  • mq - Sterlen/Vuylsteke: A Population Genomics Study of the Arabidopsis Core Cell Cycle Genes Shows the Signature of Natural Selection. Plant Cell online early
  • mq - Wingler et al.: QTL analysis for sugar-regulated leaf senescence supports flowering-dependent and -independent senescence pathways. New Phytologist online early
  • mq - Maerkl and Quake: Experimental determination of the evolvability of a transcription factor. PNAS online early
  • mq - Li et al.: The ARABIDOPSIS Accession Pna-10 Is a Naturally Occurring sng1 Deletion Mutant. Molecular Plant online early
  • mq - Guo et al.: Independent Recruitment of F Box Genes to Regulate Hermaphrodite Development during Nematode Evolution. Current Biology 19:1853-1860
  • mq - Kliebenstein: Systems Biology uncovers the foundation of natural genetic diversity. Plant Phys online early

10/09

  • mq - Angelovici et al.: Deciphering transcriptional and metabolic networks associated with lysine metabolism during Arabidopsis seed development. Plant Phys online early
  • mq - Matsuno et al.: Evolution of a Novel Phenolic Pathway for Pollen Development. Science online early
  • mq - Suzuki et al.: Differential expression and affinities of Arabidopsis gibberellin receptors can explain variation in phenotypes of multiple knock-out mutants. Plant J. 60:48
  • mq - Lewis/Spalding: Auxin transport into cotyledons and cotyledon growth depend similarly on the ABCB19 Multidrug Resistance-like transporter. Plant J. 60:91
  • mq - Myles/Buckler: Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design Plant Cell 21:2194
  • mq - Rawat/Harmer: REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways. PNAS 106:16883
  • mq - Stich: Comparison of Mating Designs for Establishing Nested Association Mapping Populations in Maize and Arabidopsis thaliana. Genetics online early
  • mq - Prusinkiewicz/Leyser: Control of bud activation by an auxin transport switch. PNAS online early

09/09

  • mq - Zhou et al.: Evolutionary and Expression Signatures of Pseudogenes in Arabidopsis and Rice Plant Phys 151:3
  • mq - Tessadori et al.: Phytochrome B and histone deacetylase 6 control light-induced chromatin compaction in Arabidopsis thaliana. PLoS Genet 5:e1000638
  • mq - Chan/Kliebenstein: Understanding the Evolution of Defense Metabolites in Arabidopsis thaliana Using Genome-Wide Association Mapping. Genetics online early
  • mq - de Rybel et al.: The past, present and future of chemical biology in auxin research. ACS Chem Biol online early
  • mq - van Zanten et al.: Hormone- and light-mediated regulation of heat-induced differential petiole growth in Arabidopsis thaliana. Plant Phys online early

08/09

  • cd - Stavang et al.:Hormonal regulation of temperature-induced growth in Arabidopsis Plant Journal
  • cd - Chapmann/Estelle: Mechanism of Auxin-Regulated Gene Expression in Plants Annual Reviews Genetics (liegt bei mir)
  • mq - Strader and Bartel: The Arabidopsis PLEIOTROPIC DRUG RESISTANCE8/ABCG36 ATP Binding Cassette Transporter Modulates Sensitivity to the Auxin Precursor Indole-3-Butyric Acid. Plant Cell online early
  • cd - Ibañes et al.:Brassinosteroid signaling and auxin transport are required to establish the periodic pattern of Arabidopsis shoot vascular bundles PNAS
  • mq - Myles/Buckler: Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design. Plant Cell online early
  • mq - French et al.: High-Throughput Quantification of Root Growth Using a Novel Image-Analysis Tool. Plant Phys online early
  • mq - Schwartz/Weigel: Cis-regulatory Changes at FLOWERING LOCUS T Mediate Natural Variation in Flowering Responses of Arabidopsis thaliana. Genetics online early
  • mq - Ghandilyan/aarts: Genetic analysis identifies quantitative trait loci controlling rosette mineral concentrations in Arabidopsis thaliana under drought. New Phytologist online early
  • mq - Pils and Heyl: Unraveling the evolution of cytokinin signaling. Plant Phys online early
  • mq - Lokerse and Weijers: Auxin enters the matrix — assembly of response machineries for specific outputs. Current Opin Plant Biol online early
  • mq - Vierstra: The ubiquitin-26S proteasome system at the nexus of plant biology. Nat Rev Mol Cell Biol. 2009, 10:385
  • mq - Stavang et al.: Hormonal regulation of temperature-induced growth in Arabidopsis. Plant J online early
  • mq - Birker et al.: A locus conferring resistance to Colletotrichum higginsianum is shared by four geographically distinct Arabidopsis accessions. Plant J online early
  • mq - Chapman and Estelle: Mechanism of Auxin-Regulated Gene Expression in Plants. Annu Rev Genet online early
  • mq - Sato and Yamamoto: What's the physiological role of Domain II-less Aux/IAA proteins? Plant Signaling & Behavior 3:496
  • mq - Stepanova and Alonso: Ethylene signaling and response: where different regulatory modules meet. Current Opin Plant Biol online early
  • mq - Yan et al.: The Arabidopsis CORONATINE INSENSITIVE1 Protein Is a Jasmonate Receptor. Plant Cell online early

07/09

  • cd - McNally et al. :Genomewide SNP variation reveals relationships among landraces and modern varieties of rice PNAS
  • mq - Kazan: Linking development to defense: auxin in plant-pathogen interactions. Trends Plant Sci online early
  • mq - Chiang et al.: Major flowering time gene, FLOWERING LOCUS C, regulates seed germination in Arabidopsis thaliana. PNAS online early
  • mq - Weigel: The 1001 Genomes Project for Arabidopsis thaliana. Genome Biology 10:107
  • mq - Alonso-Blanco et al.: What Has Natural Variation Taught Us about Plant Development, Physiology, and Adaptation? Plant Cell online early
  • mq - Grunewald et al.: Expression of the Arabidopsis jasmonate signalling repressor JAZ1/TIFY10A is stimulated by auxin. EMBO Rep. online early
  • mq - Ehrenreich/Purugganan: Candidate Gene Association Mapping of Arabidopsis Flowering Time. Genetics online early
  • mq - Slotte et al.: Splicing Variation at a FLOWERING LOCUS C Homoeolog is Associated With Flowering Time Variation in the Tetraploid Capsella bursa-pastoris. Genetics online early
  • mq - Kover et al.: A Multiparent Advanced Generation Inter-Cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genetics 5:e1000551
  • mq - Yamada/Estelle: The TRANSPORT INHIBITOR RESPONSE2 (TIR2) gene is required for auxin synthesis and diverse aspects of plant development. Plant Phys online early
  • mq - Merlet et al.: Regulation of cullin-RING E3 ubiquitin-ligases by neddylation and dimerization. Cell Mol Life Sci 66:1924
  • mq - Flowers/Purugganan: Population genomics of the Arabidopsis thaliana flowering time gene network. Mol Biol Evol online early

06/09

  • cd - Pagnussat et al.: Auxin-Dependent Patterning and Gamete Specification in the Arabidopsis Female Gametophyte Science
  • cd - Lewis et al.: Auxin Transport into Cotyledons and Cotyledon Growth Depend Similarly on the ABCB19 Multidrug Resistance-like Transporter Plant Journal
  • cd - Bajguz & Piotrowska: Conjugates of auxin and cytokinin.Phytochemistry Epub ahead of print
  • mq - Ding et al.: Genome-wide identification of BURP domain-containing genes in rice reveals a gene family with diverse structures and responses to abiotic stresses. Planta 230:149
  • mq - Vierstra: The ubiquitin–26S proteasome system at the nexus of plant biology. Nature Reviews Molecular Cell Biology 10:385
  • mq - Papanov/Palme: The evolution of nuclear auxin signalling. BMC Evol. Biol. online early
  • mq - Petersson/Ljung: An Auxin Gradient and Maximum in the Arabidopsis Root Apex Shown by High-Resolution Cell-Specific Analysis of IAA Distribution and Synthesis. Plant Cell online early
  • mq - Romanel et al.: Evolution of the B3 DNA binding superfamily: new insights into REM family gene diversification. PLoS1 4:e5791
  • mq - Kliebenstein: Quantitative genomics: analyzing intraspecific variation using global gene expression polymorphisms or eQTLs. Annu Rev Plant Biol 60:93
  • mq - Meyer/Altmann: QTL analysis of early stage heterosis for biomass in Arabidopsis. Theor Appl Genet online early
  • mq - Mravec/Friml: Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter. Nature online early
  • mq - Zeller et al.: Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays Plant J 58:1068
  • mq - Kliebenstein: Advancing Genetic Theory and Application by Metabolic Quantitative Trait Loci Analysis. Plant Cell online early
  • mq - Dun et al.: Strigolactones: discovery of the elusive shoot branching hormone. Trends Plant Sci. online early
  • mq - Weijers/Friml: SnapShot: Auxin signaling and transport. Cell 136:1172
  • mq - Santner/Estelle: Recent advances and emerging trends in plant hormone signalling. Nature 459:1071
  • mq - Ester et al.: The Phytohormone Auxin Induces G1 Cell-Cycle Arrest of Human Tumor Cells. Planta Med online early
  • mq - dos Santos/Offringa: Auxin-induced, SCFTIR1-mediated poly-ubiquitination marks AUX/IAA proteins for degradation. Plant J 59:100
  • mq - Johannes et al.: Assessing the impact of transgenerational epigenetic variation on complex traits. PLoS Genetics 5:e1000530

05/09

  • cd- Sun et al.: Arabidopsis ASA1 Is Important for Jasmonate-Mediated Regulation of Auxin Biosynthesis and Transport during Lateral Root Formation. Plant Cell Advance Online
  • cd - Trigueros et. al.: The NGATHA Genes Direct Style Development in the Arabidopsis Gynoecium. Plant Cell Advance Online
  • mq - Venancio et al.: Reconstructing the ubiquitin network - cross-talk with other systems and identification of novel functions. Genome Biol. 10:R33
  • mq - Sorefan et al.: A regulated auxin minimum is required for seed dispersal in Arabidopsis. Nature 459:583

04/09

  • mq - Ikeda-Kawakatsu et al.: Expression Level of ABERRANT PANICLE ORGANIZATION 1 Determines Rice Inflorescence Form through Control of Cell Proliferation in the Meristem. Plant Phys. online early
  • mq - Kaufmann et al.: Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis Flower. PLoS Biology 21:e90
  • mq - Moons: Transcriptional profiling of the PDR gene family in rice roots in response to plant growth regulators, redox perturbations and weak organic acid stresses. Planta 229:53
  • mq - Hayashi et al.: Toyocamycin specifically inhibits auxin signaling mediated by SCFTIR1 pathway. Phytochemistry 70:190
  • mq - Jorgensen and Emerson: RPW8 and resistance to powdery mildew pathogens in natural populations of Arabidopsis lyrata. New Phytologist online early
  • cd - Ploense et al.: A gain-of-function mutation in IAA18 alters Arabidopsis embryonic apical patterning. Development [1]
  • cd - Sukumar et al.: PINOID kinase regulates root gravitropism through modulation of PIN2-dependent basipetal auxin transport in Arabidopsis thaliana. PlantPhys ePub [2]
  • cd - Sugawara et al.: Biochemical analyses of indole-3-acetaldoxime-dependent auxin biosynthesis in Arabidopsis [3]
  • cd - Yang & Murphy: Functional expression and characterization of Arabidopsis ABCB, AUX 1 and PIN auxin transporters in Schizosaccharomyces pombe. [4]
  • cd - Santos Maraschin et al.: Auxin-induced, SCFTIR1-mediated poly-ubiquitination marks of AUX/IAA proteins for degradation. [5]
  • cd - Nakasone et al.: A gene encoding SMALL ACIDIC PROTEIN 2 potentially mediates the response to synthetic auxin, 2,4-dichlorophenoxyacetic acid, in Arabidopsis thaliana. [6] kommt man leider noch nicht dran!----In diesem Zusammenhang aber auch vielleicht interessant: A small acidic protein 1 (SMAP1) mediates responses of the Arabidopsis root to the synthetic auxin 2,4-dichlorophenoxyacetic acid (2006)[7]

03/09

  • mq - Liti et al.: Population genomics of domestic and wild yeasts. Nature 458:337
  • mq - Schacherer et al.: Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae. Nature 458:342
  • mq - Yuan et al.: A naturally occurring splicing site mutation in the Brassica rapa FLC1 gene is associated with variation in flowering time. JXB 60:1299
  • mq - Craig et al.: E3 ubiquitin ligases and plant innate immunity. JXB 60:1123
  • mq - Titapiwatanakun and Murphy: Post-transcriptional regulation of auxin transport proteins: cellular trafficking, protein phosphorylation, protein maturation, ubiquitination, and membrane composition. JXB 60:1093
  • mq - Somers: Thinking outside the F-box: novel ligands for novel receptors. Trends Plant Sci online early
  • mq - Cooper et al.: Modeling QTL for complex traits: detection and context for plant breeding. Curr Opin Plant Biol online early
  • mq - Benkova et al.: A morphogenetic trigger: is there an emerging concept in plant developmental biology? Trends Plant Sci online early
  • mq - Lau et al.: Auxin signaling in algal lineages: fact or myth? Trends Plant Sci online early
  • mq - Skirpan/McSteen: BARREN INFLORESCENCE2 Interaction with ZmPIN1a Suggests a Role in Auxin Transport During Maize Inflorescence Development. [http://pcp.oxfordjournals.org/cgi/content/abstract/50/3/652?etoc Plant Cell Phys 50:652
  • mq - Pfalz/Kroymann: The Gene Controlling the Indole Glucosinolate Modifier1 Quantitative Trait Locus Alters Indole Glucosinolate Structures and Aphid Resistance in Arabidopsis. Plant Cell online early
  • mq - Lewis/Muday: Measurement of auxin transport in Arabidopsis thaliana. Nat Prot 4:437
  • mq - Rae et al.: Five QTL hotspots for yield in short rotation coppice bioen- ergy poplar: The Poplar Biomass Loci. BMC Plant Biol 9::23
  • mq - Gusti/Genschik: The Arabidopsis thaliana F-box protein FBL17 is essential for progression through the second mitosis during pollen development. PLoS1 4:e4780
  • mq - Lee/Ellis: Arabidopsis mitogen-activated protein kinase MPK12 interacts with the MAPK phosphatase IBR5 and regulates auxin signaling. Plant J 57:975-985
  • mq - Pollmann/Weiler: Tryptophan-dependent indole-3-acetic acid biosynthesis by ‘IAA-synthase’ proceeds via indole-3-acetamide. Phytochemistry online early
  • mq - Craig et al.: E3 ubiquitin ligases and plant innate immunity. J Exp Bot online early
  • mq - Stich/Melchinger: Comparison of mixed-model approaches for association mapping in rapeseed, potato, sugar beet, maize, and Arabidopsis. BMC Genomics online early

02/09

  • cd - Ruzika et al.: Cytokinin regulates root meristem activity via modulation of the polar auxin transport.PNAS early [8]
  • cd - Bentkova & Hejatko - Review: Hormone interactions at the root apical meristem. Plant Mol Biol [9]
  • cd - Kuppusamy et al. -Review: Cross-regulatory mechanisms in hormone signaling. Plant Mol Biol [10]
  • cd - Fukaki & Tasaka-Review: Hormone interactions during lateral root formation Plant Mol Biol [11]
  • cd- Takahashi et al. Review: Hormonal interactions during root tropic growth: hydrotropism versus gravitropism. Plant Mol Biol [12]
  • cd - Alabadí & Blázquez - Review: Molecular interactions between light and hormone signaling to control plant growth. lant Mol Biol [13]
  • mq - Qiao/Ecker: Interplay between ethylene, ETP1/ETP2 F-box proteins, and degradation of EIN2 triggers ethylene responses in Arabidopsis. Genes Dev online early
  • mq - Jansen et al.: Defining gene and QTL networks. Current Opin Plant Biol 12:1-6
  • mq - Balasubramanian/Weigel: QTL Mapping in new arabidopsis thaliana advanced intercross-recombinant inbred lines. PLoS1 4:e4318
  • mq - Volkov et al.: Biologically Closed Electrical Circuits in Venus Flytrap. Plant Phys online early
  • mq - Wang/Spalding: HYPOTrace: image analysis software for measuring hypocotyl growth and shape demonstrated on Arabidopsis seedlings undergoing photomorphogenesis. Plant Phys online early
  • mq - Pernisova et al.: Cytokinins modulate auxin-induced organogenesis in plants via regulation of the auxin efflux. PNAS online early
  • mq - Pan et al.: The E3 Ubiquitin Ligase SCFTIR1/AFB and Membrane Sterols Play Key Roles in Auxin Regulation of Endocytosis, Recycling, and Plasma Membrane Accumulation of the Auxin Efflux Transporter PIN2 in Arabidopsis thaliana. Plant Cell online early
  • mq - Plantegenet/Hardtke: Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance. Mol Syst Biol 5:242
  • mq - Wiszniewski et al.: Identification of two Arabidopsis genes encoding a peroxisomal oxidoreductase-like protein and an acyl-CoA synthetase-like protein that are required for responses to pro-auxins. Plant Mol Biol 69:503-515
  • mq - Böttner/Dröge-Laser: Nuclear accumulation of the ankyrin repeat protein ANK1 enhances auxin mediated transcription accomplished by the bZIP transcription factors BZI-1 and BZI-2. Plant J online early
  • mq - Pressoir et al.: Natural variation in maize architecture is mediated by allelic differences at the PINOID co-ortholog barren inflorescence2. Plant J online early
  • mq - Schranz/Mitchell-Olds: Ecological genomics of Boechera stricta: identification of a QTL controlling the allocation of methionine- vs branched-chain amino acid-derived glucosinolates and levels of insect herbivory. Heredity online early

01/09

  • cd - Perez-Torres et al.: Phosphate Availability Alters Lateral Root Development in Arabidopsis by Modulating Auxin Sensitivity via a Mechanism Involving the TIR1 Auxin Receptor. Plant Cell [14]
  • mq - Laskowski/Scheres: Root System Architecture from Coupling Cell Shape to Auxin Transport. PLoS Biology 6:e307
  • mq - Titapiwatanakun/Murphy: ABCB19/PGP19 stabilises PIN1 in membrane microdomains in Arabidopsis. Plant J 57:27
  • mq - Loudet/Chory: A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. PNAS 105:17193 pdf bei mir
  • mq - Perez-Torres/Herrera-Estrella: Phosphate Availability Alters Lateral Root Development in Arabidopsis by Modulating Auxin sensitivity via a Mechanism Involving the TIR1 Auxin Receptor. Plant Cell online early
  • mq - Gilkerson/Callis: Isolation and Characterization of cul1-7, a Recessive Allele of CULLIN1 that Disrupts SCF Function at the C-terminus of CUL1 in Arabidopsis thaliana. Genetics online early
  • mq - Li/Guilfoyle: Constitutive Repression and Activation of Auxin Signaling in Arabidopsis. Plant Phys online early
  • mq - Pandey/Assmann - Two Novel GPCR-Type G Proteins Are Abscisic Acid Receptors in Arabidopsis. Cell 136, 9:136
  • mq - Jorgensen/Emerson: Functional variation in a disease resistance gene in populations of Arabidopsis thaliana. Molecular Ecology 17:4912
  • mq - : Grunewald et al.: Parasitic nematodes modulate PIN-mediated auxin transport to facilitate infection. PLoS Pathogens 5:e1000266
  • mq - Stuttmann/Noel: COP9 signalosome- and 26S Proteasome-dependent regulation of SCFTIR1 accumulation in Arabidopsis. JBC online early
  • mq - Cecchetti et al.: Auxin regulates Arabidopsis anther dehiscence, pollen maturation, and filament elongation. Plant Cell online early
  • mq - Ogata et al.: KAGIANA: An Excel-Based Tool for Retrieving Summary Information on Arabidopsis Genes. Plant and Cell Physiology 50:173
  • mq - Grunewald et al.: Parasitic Nematodes Modulate PIN-Mediated Auxin Transport to Facilitate Infection. PLoS Pathogens 5:e1000266
  • mq - Chung/Howe: A critical role for the TIFY motif in repression of jasmonate signaling by repression of a stabilized splice variant of JASMONATE ZIM-domain protein JAZ10 in Arabidopsis. Plant Cell online early
  • mq - Lister/Ecker: Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond. Current Opinion in Plant Biology online early
  • mq - Chandler: Local auxin production: a small contribution to a big field. Bioassays 31:60
  • mq - Pressoir et al.: Natural variation in maize architecture is mediated by allelic differences at the PINOID co-ortholog barren inflorescence2. Plant J online early
  • mq - Orsi and Tanksley: Natural variation in an ABC transporter gene associated with seed size evolution in tomato species. PLoS Genetics 5:e1000347
  • mq - Barkoulas/Tsiantis: A developmental framework for dissected leaf formation in the Arabidopsis relative Cardamine hirsuta. Nature Genetics 40:1136
  • mq - Fu et al.: System-wide molecular evidence for phenotypic buffering in Arabidopsis. Nature Genetics online early
  • mq - Zourelidou/Schwechheimer: The polarly localized D6 PROTEIN KINASE is required for efficient auxin transport in Arabidopsis thaliana. Development 136:627

12/08

  • mq - Cheng/Zhao: NPY genes and AGC kinases define two key steps in auxin-mediated organogenesis in Arabidopsis. PNAS online early
  • mq - Bari & Jones: Role of plant hormones in plant defence responses. Plant Mol Biol 2009 online early
  • mq - Dilkes et al.: The Maternally Expressed WRKY Transcription Factor TTG2 Controls Lethality in Interploidy Crosses of Arabidopsis. PLoS Biology 6:e308
  • mq - Zhen & Ungerer: Relaxed selection on the CBF/DREB1 regulatory genes and reduced freezing tolerance in the southern range of Arabidopsis thaliana. Mol Biol Evol 25:2547
  • mq - Nordborg/Weigel: Next-generation genetics in plants. Nature 456:720
  • mq - Rockman: Reverse engineering the genotype-phenotype map with natural genetic variation. Nature 456:738
  • mq - Donnelly: Progress and challenges in genome-wide association studies in humans. Nature 456:728
  • mq - Gao et al.: Cell Polarity Signaling: Focus on Polar Auxin Transport. Mol Plant 1:899

11/08

  • mq - Ditengou/Palme: Mechanical induction of lateral root initiation in Arabidopsis thaliana. PNAS online early
  • mq - Song et al.: Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments. Planta online early
  • mq - Ludwig-Müller/Reski: Moss (Physcomitrella patens) GH3 proteins act in auxin homeostasis. New Phytol online early
  • mq - Russo et al.: Phytochemical and genetic analyses of ancient cannabis from Central Asia. JXB 59:4171
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10/08

09/08

  • mq - Souer et al.: Patterning of Inflorescences and Flowers by the F-Box Protein DOUBLE TOP and the LEAFY Homolog ABERRANT LEAF AND FLOWER of Petunia. Plant Cell 20:2033
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08/08

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  • mq - Rubin: Genomics of cellulosic biofuels. Nature online early
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07/08

  • mq - Raikhel: 2020 Vision for Biology: The Role of Plants in Addressing Grand Challenges in Biology. Molecular Plant 1:561
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06/08

  • mq - Francois et al.: Demographic History of European Populations of Arabidopsis thaliana. PLoS Genetics 4:e1000075.
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05/08

  • mq - Goda et al.: The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access. Plant Journal online early
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  • mq - Sicard et al.: Identification of quantitative trait loci controlling symptom development during viral infection in Arabidopsis thaliana. MPMI 21:198 abstract (pdf bei mir)

04/08

  • mq - Nilsson/Bhalearo et al.: Dissecting the Molecular Basis of the Regulation of Wood Formation by Auxin in Hybrid Aspen. Plant Cell online early
  • mq - Zeng et al.: Genetic analysis of the physiological responses to low boron stress in Arabidopsis thaliana. Genetic analysis of the physiological responses to low boron stress in Arabidopsis thaliana. Plant, Cell & Environment 31:12
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03/08

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