Quint Lab:papers of the month: Difference between revisions
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<h3><font style="color:#F8B603;">papers of the month</font></h3> | <h3><font style="color:#F8B603;">papers of the month</font></h3> | ||
===03/12=== | |||
*cd - Todesco et al. (2012): Natural Variation in Biogenesis Efficiency of Individual Arabidopsis thaliana MicroRNAs [http://www.cell.com/current-biology/abstract/S0960-9822%2811%2901381-9 Current Biology] | |||
*cd - de Felippes et al. (2012): MIGS: miRNA-induced gene silencing [http://onlinelibrary.wiley.com/doi/10.1111/j.1365-313X.2011.04896.x/abstract;jsessionid=D039AB61F5B8914036815F64268DE7EC.d02t03 Plant Journal] | |||
*cd - Denby et al. (2012): Negative feedback confers mutational robustness in yeast transcription factor regulation [http://www.pnas.org/content/109/10/3874.abstract?etoc PNAS] | |||
*cd - Yashina et al. Regeneration of whole fertile plants from 30,000-y-old fruit tissue buried in Siberian permafrost [http://www.pnas.org/content/109/10/4008.abstract?etoc PNAS] | |||
*cd - Chickarmane et al. (2012) Cytokinin signaling as a positional cue for patterning the apical–basal axis of the growing Arabidopsis shoot meristem [http://www.pnas.org/content/109/10/4002.abstract?etoc PNAS] | |||
===04/11=== | |||
*ku - Hu et al. (2011): The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. [http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.807.html Nature Genetics] | |||
*cd - Sun et al (2011): Jasmonate modulates endocytosis and plasma membrane accumulation of the Arabidopsis PIN2 protein. [http://www.ncbi.nlm.nih.gov/pubmed/21466556 New Phytologist] | |||
===01/11=== | |||
*cd - Lucas et al. (2011): SHORT-ROOT Regulates Primary, Lateral, and Adventitious Root Development in Arabidopsis [http://www.plantphysiol.org/cgi/content/abstract/155/1/384?etoc Plant Phys] | |||
===12/10=== | |||
*cd - Galpez & Reymond (2010): Natural Variation in Arabidopsis thaliana Revealed a Genetic Network Controlling Germination Under Salt Stress. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3004798/?tool=pubmed PLoS One] | |||
*cd - Wabnik et al. (2010): Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling. [ http://www.nature.com/msb/journal/v6/n1/full/msb2010103.html MolSysBiol] | |||
*mq - Domazet-Loso & Tautz: A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns. [http://www.nature.com/nature/journal/v468/n7325/full/nature09632.html Nature 468:815] | |||
*mq - Jurado/del Pozo: The Arabidopsis Cell Cycle F-Box Protein SKP2A Binds to Auxin. [Plant Cell online early] | |||
*mq - Li/Borevitz: Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana. [http://www.pnas.org/content/107/49/21199.abstract?etoc PNAS 107:21199] | |||
*mq - Nicotra et al.: Plant phenotypic plasticity in a changing climate. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TD1-5192X3H-1&_user=4832532&_coverDate=12%2F31%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=88829d882f9a82fa5f11909a87cba1ee&searchtype=a Trends in Plant Sciences 15:684] | |||
*mq - Ahuja et al.: Plant molecular stress responses face climate change. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TD1-511KRND-1&_user=4832532&_coverDate=12%2F31%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=08459e7ed27e0a4f7bda907d0af14691&searchtype=a Trends in Plant Sciences 15:664] | |||
*mq - Baxter et al.: Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome. [http://www.sciencemag.org/content/330/6010/1549.abstract?sa_campaign=Email/toc/10-December-2010/10.1126/science.1195203 Science 330:1549] | |||
*mq - Schirawski/Kahmann: Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison. [http://www.sciencemag.org/content/330/6010/1546.abstract?sa_campaign=Email/toc/10-December-2010/10.1126/science.1195330 Science 330:1546] | |||
*mq - Spanu/Panstruga: Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism. [http://www.sciencemag.org/content/330/6010/1543.abstract?sa_campaign=Email/toc/10-December-2010/10.1126/science.1194573 Science 330:1543] | |||
*mq - Raffaele/Kamoun: Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage. [http://www.sciencemag.org/content/330/6010/1540.abstract?sa_campaign=Email/toc/10-December-2010/10.1126/science.1193070 Science 330:1540] | |||
*mq - Bennett et al.: Dynamics of Cullin-RING Ubiquitin Ligase Network Revealed by Systematic Quantitative Proteomics. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WSN-51NFP7M-G&_user=4832532&_coverDate=12%2F10%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=771e957191957b66a30f57b90904a1c5&searchtype=a Cell 143:951] | |||
*mq - van Wageningen et al.: Functional Overlap and Regulatory Links Shape Genetic Interactions between Signaling Pathways. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WSN-51NFP7M-K&_user=4832532&_coverDate=12%2F10%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=68eb98612e8d403102fa1c42a304c6c9&searchtype=a Cell 143:991] | |||
===11/10=== | |||
*cd - Marta Del Bianco and Stefan Kepinski: Context, Specificity and Self-Organization in Auxin Response [http://cshperspectives.cshlp.org/content/early/2010/11/01/cshperspect.a001578.full.pdf+html Cold Spring Harb Persp Biol] | |||
*mq - de Smet et al.: Unraveling the evolution of auxin signaling [http://www.plantphysiol.org/cgi/content/abstract/pp.110.168161v1 Plant Phys online early] | |||
*mq - Li/Borevitz: Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana [http://www.ncbi.nlm.nih.gov/pubmed/21078970 PNAS online early] | |||
*mq - Mao et al.: Linking differential domain functions of the GS3 protein to natural variation of grain size in rice [http://www.pnas.org/content/107/45/19579.abstract?etoc PNAS 9:19579] | |||
*mq - Prigge/Estelle: Physcomitrella patens Auxin-Resistant Mutants Affect Conserved Elements of an Auxin-Signaling Pathway [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRT-517H72H-1&_user=4832532&_coverDate=11%2F09%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=2011453594edf8ca715362a5ab79fb07&searchtype=a Current Biology 20:1907] | |||
*mq - Sakata et al.: Tissue-specific auxin signaling in response to temperature fluctuation [http://www.landesbioscience.com/journals/psb/article/13706/ Plant Signaling & Behavior online early] | |||
*mq - Sato/Katagiri: Network Modeling Reveals Prevalent Negative Regulatory Relationships between Signaling Sectors in Arabidopsis Immune Signaling. [http://www.plospathogens.org/article/info%3Adoi%2F10.1371%2Fjournal.ppat.1001011 PLoS Pathogens 6(7): e1001011] | |||
*mq - Bergelson & Roux: Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana. [http://www.ncbi.nlm.nih.gov/pubmed/21085205 Nature Rev Genet 11:867] | |||
*mq - Tsuda/Hayashi: Alkoxy-auxins are selective inhibitors of auxin transport mediated by PIN, ABCB and AUX1 transporters. [http://www.ncbi.nlm.nih.gov/pubmed/21084292 JBC online early] | |||
*mq - Spaepen and Vanderleyen: Auxin and Plant-Microbe Interactions. [http://www.ncbi.nlm.nih.gov/pubmed/21084388 Cold Spring Harb Perspect Biol. online early] | |||
*mq - Zhao et al.: SOS3 mediates lateral root development under low salt stress through regulation of auxin redistribution and maxima in Arabidopsis. [http://www.ncbi.nlm.nih.gov/pubmed/21087263 New Phytologist online early] | |||
*mq - Alcazar/Reymond: Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions. [http://www.ncbi.nlm.nih.gov/pubmed/21037570 Nature Genet online early] | |||
*mq - Liu & Zhu: Functional divergence of the NIP III subgroup proteins involved altered selective constraints and positive selection. [http://www.biomedcentral.com/1471-2229/10/256 BMC Plant Biology 10:256] | |||
*mq - Lima et al.: Genomic evolution and complexity of the Anaphase-promoting Complex (APC) in land plants. [http://www.biomedcentral.com/1471-2229/10/254/abstract BMC Plant Biology 10:254] | |||
===10/10=== | |||
*mq - Shoval & Alon: SnapShot: Network Motifs. [http://www.ncbi.nlm.nih.gov/pubmed/20946989 Cell 143:326e1-2] | |||
*mq - Ruschaki et al.: The proteasome antechamber maintains substrates in an unfolded state. [http://www.nature.com/nature/journal/v467/n7317/abs/nature09444.html?lang=en Nature 467:868–871] | |||
*mq - Sheard et al.: Jasmonate perception by inositol-phosphate-potentiated COI1-JAZ co-receptor. [http://www.ncbi.nlm.nih.gov/pubmed/20927106 Nature online early] | |||
*mq - Xu et al.: Cell surface- and rho GTPase-based auxin signaling controls cellular interdigitation in Arabidopsis. [http://www.ncbi.nlm.nih.gov/pubmed/20887895 Cell 143:99-110] | |||
*mq - Robert/Friml: ABP1 mediates auxin inhibition of clathrin-dependent endocytosis in Arabidopsis. [http://www.ncbi.nlm.nih.gov/pubmed/20887896 Cell 143:111-121] | |||
*mq - Yu et al.: Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana. [http://www.pnas.org/content/107/41/17809.abstract?etoc PNAS online early] | |||
*mq - de Rybel et al.: A Novel Aux/IAA28 Signaling Cascade Activates GATA23-Dependent Specification of Lateral Root Founder Cell Identity. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRT-514HM8J-6&_user=4832532&_coverDate=10%2F12%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=2204b5a35c54ce9a7b0e75e51f49acf3&searchtype=a Current Biology 19:1697] | |||
*mq - Prigge/Estelle: Physcomitrella patens Auxin-Resistant Mutants Affect Conserved Elements of an Auxin-Signaling Pathway. [http://www.ncbi.nlm.nih.gov/pubmed/20951049 Current Biology online early] | |||
===09/10=== | |||
*mq - Dubois et al.: Physiological and Genetic Characterization of End-of-Day Far-Red Light Response in Maize Seedlings. [http://www.plantphysiol.org/cgi/content/abstract/154/1/173?etoc Plant Phys. 154:173] | |||
===08/10=== | ===08/10=== | ||
*mq - Chen and Lübberstedt: Molecular basis of trait correlations. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TD1-508DNXD-2&_user=4832532&_coverDate=08%2F31%2F2010&_rdoc=1&_fmt=high&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=81622f48c46b941888ea7c008326509c Trends in Plant Sciences 15:454] | *mq - Chen and Lübberstedt: Molecular basis of trait correlations. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TD1-508DNXD-2&_user=4832532&_coverDate=08%2F31%2F2010&_rdoc=1&_fmt=high&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=81622f48c46b941888ea7c008326509c Trends in Plant Sciences 15:454] | ||
*mq - Tromas/Perrot-Rechenmann: AUXIN BINDING PROTEIN 1: functional and evolutionary aspects. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TD1-50744RN-1&_user=4832532&_coverDate=08%2F31%2F2010&_rdoc=1&_fmt=high&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=4018897c7bd511c1d9b795616d0c91a7 Trends in Plant Sciences 15:436] | *mq - Tromas/Perrot-Rechenmann: AUXIN BINDING PROTEIN 1: functional and evolutionary aspects. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TD1-50744RN-1&_user=4832532&_coverDate=08%2F31%2F2010&_rdoc=1&_fmt=high&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=4018897c7bd511c1d9b795616d0c91a7 Trends in Plant Sciences 15:436] | ||
*mq - Sulpice/Stitt: Network Analysis of Enzyme Activities and Metabolite Levels and Their Relationship to Biomass in a Large Panel of Arabidopsis Accessions. [http://www.plantcell.org/cgi/content/abstract/tpc.110.076653v1?papetoc Plant Cell online early] | |||
*mq - Schwember & Bradford: Quantitative trait loci associated with longevity of lettuce seeds under conventional and controlled deterioration storage conditions. [http://jxb.oxfordjournals.org/cgi/content/abstract/erq248v1?etoc JXB online early] | |||
*mq - Shen et al.: Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.). [http://jxb.oxfordjournals.org/cgi/content/abstract/erq208v1?etoc http://jxb.oxfordjournals.org/cgi/content/abstract/erq208v1?etoc JXB online early] | |||
*mq - Nemri/Jones: Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping. [http://www.ncbi.nlm.nih.gov/pubmed/20479233 PNAS 107:10302] | |||
*mq - Tognetti et al.: Perturbation of Indole-3-Butyric Acid Homeostasis by the UDP-Glucosyltransferase UGT74E2 Modulates Arabidopsis Architecture and Water Stress Tolerance. [http://www.ncbi.nlm.nih.gov/pubmed/20798329 Plant Cell online early] | |||
*mq - Hou et al.: A platform of high-density INDEL/CAPS markers for map-based cloning in Arabidopsis. [http://onlinelibrary.wiley.com/doi/10.1111/j.1365-313X.2010.04277.x/full Plant Journal 63:880] | |||
===07/10=== | ===07/10=== |
Latest revision as of 00:21, 7 March 2012
papers of the month
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