Quint Lab:papers of the month: Difference between revisions
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<h3><font style="color:#F8B603;">papers of the month</font></h3> | <h3><font style="color:#F8B603;">papers of the month</font></h3> | ||
===03/12=== | |||
*cd - Todesco et al. (2012): Natural Variation in Biogenesis Efficiency of Individual Arabidopsis thaliana MicroRNAs [http://www.cell.com/current-biology/abstract/S0960-9822%2811%2901381-9 Current Biology] | |||
*cd - de Felippes et al. (2012): MIGS: miRNA-induced gene silencing [http://onlinelibrary.wiley.com/doi/10.1111/j.1365-313X.2011.04896.x/abstract;jsessionid=D039AB61F5B8914036815F64268DE7EC.d02t03 Plant Journal] | |||
*cd - Denby et al. (2012): Negative feedback confers mutational robustness in yeast transcription factor regulation [http://www.pnas.org/content/109/10/3874.abstract?etoc PNAS] | |||
*cd - Yashina et al. Regeneration of whole fertile plants from 30,000-y-old fruit tissue buried in Siberian permafrost [http://www.pnas.org/content/109/10/4008.abstract?etoc PNAS] | |||
*cd - Chickarmane et al. (2012) Cytokinin signaling as a positional cue for patterning the apical–basal axis of the growing Arabidopsis shoot meristem [http://www.pnas.org/content/109/10/4002.abstract?etoc PNAS] | |||
===04/11=== | |||
*ku - Hu et al. (2011): The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. [http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.807.html Nature Genetics] | |||
*cd - Sun et al (2011): Jasmonate modulates endocytosis and plasma membrane accumulation of the Arabidopsis PIN2 protein. [http://www.ncbi.nlm.nih.gov/pubmed/21466556 New Phytologist] | |||
===01/11=== | |||
*cd - Lucas et al. (2011): SHORT-ROOT Regulates Primary, Lateral, and Adventitious Root Development in Arabidopsis [http://www.plantphysiol.org/cgi/content/abstract/155/1/384?etoc Plant Phys] | |||
===12/10=== | |||
*cd - Galpez & Reymond (2010): Natural Variation in Arabidopsis thaliana Revealed a Genetic Network Controlling Germination Under Salt Stress. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3004798/?tool=pubmed PLoS One] | |||
*cd - Wabnik et al. (2010): Emergence of tissue polarization from synergy of intracellular and extracellular auxin signaling. [ http://www.nature.com/msb/journal/v6/n1/full/msb2010103.html MolSysBiol] | |||
*mq - Domazet-Loso & Tautz: A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns. [http://www.nature.com/nature/journal/v468/n7325/full/nature09632.html Nature 468:815] | |||
*mq - Jurado/del Pozo: The Arabidopsis Cell Cycle F-Box Protein SKP2A Binds to Auxin. [Plant Cell online early] | |||
*mq - Li/Borevitz: Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana. [http://www.pnas.org/content/107/49/21199.abstract?etoc PNAS 107:21199] | |||
*mq - Nicotra et al.: Plant phenotypic plasticity in a changing climate. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TD1-5192X3H-1&_user=4832532&_coverDate=12%2F31%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=88829d882f9a82fa5f11909a87cba1ee&searchtype=a Trends in Plant Sciences 15:684] | |||
*mq - Ahuja et al.: Plant molecular stress responses face climate change. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TD1-511KRND-1&_user=4832532&_coverDate=12%2F31%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=08459e7ed27e0a4f7bda907d0af14691&searchtype=a Trends in Plant Sciences 15:664] | |||
*mq - Baxter et al.: Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome. [http://www.sciencemag.org/content/330/6010/1549.abstract?sa_campaign=Email/toc/10-December-2010/10.1126/science.1195203 Science 330:1549] | |||
*mq - Schirawski/Kahmann: Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison. [http://www.sciencemag.org/content/330/6010/1546.abstract?sa_campaign=Email/toc/10-December-2010/10.1126/science.1195330 Science 330:1546] | |||
*mq - Spanu/Panstruga: Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism. [http://www.sciencemag.org/content/330/6010/1543.abstract?sa_campaign=Email/toc/10-December-2010/10.1126/science.1194573 Science 330:1543] | |||
*mq - Raffaele/Kamoun: Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage. [http://www.sciencemag.org/content/330/6010/1540.abstract?sa_campaign=Email/toc/10-December-2010/10.1126/science.1193070 Science 330:1540] | |||
*mq - Bennett et al.: Dynamics of Cullin-RING Ubiquitin Ligase Network Revealed by Systematic Quantitative Proteomics. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WSN-51NFP7M-G&_user=4832532&_coverDate=12%2F10%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=771e957191957b66a30f57b90904a1c5&searchtype=a Cell 143:951] | |||
*mq - van Wageningen et al.: Functional Overlap and Regulatory Links Shape Genetic Interactions between Signaling Pathways. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WSN-51NFP7M-K&_user=4832532&_coverDate=12%2F10%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=68eb98612e8d403102fa1c42a304c6c9&searchtype=a Cell 143:991] | |||
===11/10=== | |||
*cd - Marta Del Bianco and Stefan Kepinski: Context, Specificity and Self-Organization in Auxin Response [http://cshperspectives.cshlp.org/content/early/2010/11/01/cshperspect.a001578.full.pdf+html Cold Spring Harb Persp Biol] | |||
*mq - de Smet et al.: Unraveling the evolution of auxin signaling [http://www.plantphysiol.org/cgi/content/abstract/pp.110.168161v1 Plant Phys online early] | |||
*mq - Li/Borevitz: Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana [http://www.ncbi.nlm.nih.gov/pubmed/21078970 PNAS online early] | |||
*mq - Mao et al.: Linking differential domain functions of the GS3 protein to natural variation of grain size in rice [http://www.pnas.org/content/107/45/19579.abstract?etoc PNAS 9:19579] | |||
*mq - Prigge/Estelle: Physcomitrella patens Auxin-Resistant Mutants Affect Conserved Elements of an Auxin-Signaling Pathway [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRT-517H72H-1&_user=4832532&_coverDate=11%2F09%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=2011453594edf8ca715362a5ab79fb07&searchtype=a Current Biology 20:1907] | |||
*mq - Sakata et al.: Tissue-specific auxin signaling in response to temperature fluctuation [http://www.landesbioscience.com/journals/psb/article/13706/ Plant Signaling & Behavior online early] | |||
*mq - Sato/Katagiri: Network Modeling Reveals Prevalent Negative Regulatory Relationships between Signaling Sectors in Arabidopsis Immune Signaling. [http://www.plospathogens.org/article/info%3Adoi%2F10.1371%2Fjournal.ppat.1001011 PLoS Pathogens 6(7): e1001011] | |||
*mq - Bergelson & Roux: Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana. [http://www.ncbi.nlm.nih.gov/pubmed/21085205 Nature Rev Genet 11:867] | |||
*mq - Tsuda/Hayashi: Alkoxy-auxins are selective inhibitors of auxin transport mediated by PIN, ABCB and AUX1 transporters. [http://www.ncbi.nlm.nih.gov/pubmed/21084292 JBC online early] | |||
*mq - Spaepen and Vanderleyen: Auxin and Plant-Microbe Interactions. [http://www.ncbi.nlm.nih.gov/pubmed/21084388 Cold Spring Harb Perspect Biol. online early] | |||
*mq - Zhao et al.: SOS3 mediates lateral root development under low salt stress through regulation of auxin redistribution and maxima in Arabidopsis. [http://www.ncbi.nlm.nih.gov/pubmed/21087263 New Phytologist online early] | |||
*mq - Alcazar/Reymond: Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions. [http://www.ncbi.nlm.nih.gov/pubmed/21037570 Nature Genet online early] | |||
*mq - Liu & Zhu: Functional divergence of the NIP III subgroup proteins involved altered selective constraints and positive selection. [http://www.biomedcentral.com/1471-2229/10/256 BMC Plant Biology 10:256] | |||
*mq - Lima et al.: Genomic evolution and complexity of the Anaphase-promoting Complex (APC) in land plants. [http://www.biomedcentral.com/1471-2229/10/254/abstract BMC Plant Biology 10:254] | |||
===10/10=== | |||
*mq - Shoval & Alon: SnapShot: Network Motifs. [http://www.ncbi.nlm.nih.gov/pubmed/20946989 Cell 143:326e1-2] | |||
*mq - Ruschaki et al.: The proteasome antechamber maintains substrates in an unfolded state. [http://www.nature.com/nature/journal/v467/n7317/abs/nature09444.html?lang=en Nature 467:868–871] | |||
*mq - Sheard et al.: Jasmonate perception by inositol-phosphate-potentiated COI1-JAZ co-receptor. [http://www.ncbi.nlm.nih.gov/pubmed/20927106 Nature online early] | |||
*mq - Xu et al.: Cell surface- and rho GTPase-based auxin signaling controls cellular interdigitation in Arabidopsis. [http://www.ncbi.nlm.nih.gov/pubmed/20887895 Cell 143:99-110] | |||
*mq - Robert/Friml: ABP1 mediates auxin inhibition of clathrin-dependent endocytosis in Arabidopsis. [http://www.ncbi.nlm.nih.gov/pubmed/20887896 Cell 143:111-121] | |||
*mq - Yu et al.: Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana. [http://www.pnas.org/content/107/41/17809.abstract?etoc PNAS online early] | |||
*mq - de Rybel et al.: A Novel Aux/IAA28 Signaling Cascade Activates GATA23-Dependent Specification of Lateral Root Founder Cell Identity. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRT-514HM8J-6&_user=4832532&_coverDate=10%2F12%2F2010&_rdoc=1&_fmt=high&_orig=search&_origin=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=2204b5a35c54ce9a7b0e75e51f49acf3&searchtype=a Current Biology 19:1697] | |||
*mq - Prigge/Estelle: Physcomitrella patens Auxin-Resistant Mutants Affect Conserved Elements of an Auxin-Signaling Pathway. [http://www.ncbi.nlm.nih.gov/pubmed/20951049 Current Biology online early] | |||
===09/10=== | |||
*mq - Dubois et al.: Physiological and Genetic Characterization of End-of-Day Far-Red Light Response in Maize Seedlings. [http://www.plantphysiol.org/cgi/content/abstract/154/1/173?etoc Plant Phys. 154:173] | |||
===08/10=== | |||
*mq - Chen and Lübberstedt: Molecular basis of trait correlations. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TD1-508DNXD-2&_user=4832532&_coverDate=08%2F31%2F2010&_rdoc=1&_fmt=high&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=81622f48c46b941888ea7c008326509c Trends in Plant Sciences 15:454] | |||
*mq - Tromas/Perrot-Rechenmann: AUXIN BINDING PROTEIN 1: functional and evolutionary aspects. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TD1-50744RN-1&_user=4832532&_coverDate=08%2F31%2F2010&_rdoc=1&_fmt=high&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=4018897c7bd511c1d9b795616d0c91a7 Trends in Plant Sciences 15:436] | |||
*mq - Sulpice/Stitt: Network Analysis of Enzyme Activities and Metabolite Levels and Their Relationship to Biomass in a Large Panel of Arabidopsis Accessions. [http://www.plantcell.org/cgi/content/abstract/tpc.110.076653v1?papetoc Plant Cell online early] | |||
*mq - Schwember & Bradford: Quantitative trait loci associated with longevity of lettuce seeds under conventional and controlled deterioration storage conditions. [http://jxb.oxfordjournals.org/cgi/content/abstract/erq248v1?etoc JXB online early] | |||
*mq - Shen et al.: Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.). [http://jxb.oxfordjournals.org/cgi/content/abstract/erq208v1?etoc http://jxb.oxfordjournals.org/cgi/content/abstract/erq208v1?etoc JXB online early] | |||
*mq - Nemri/Jones: Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping. [http://www.ncbi.nlm.nih.gov/pubmed/20479233 PNAS 107:10302] | |||
*mq - Tognetti et al.: Perturbation of Indole-3-Butyric Acid Homeostasis by the UDP-Glucosyltransferase UGT74E2 Modulates Arabidopsis Architecture and Water Stress Tolerance. [http://www.ncbi.nlm.nih.gov/pubmed/20798329 Plant Cell online early] | |||
*mq - Hou et al.: A platform of high-density INDEL/CAPS markers for map-based cloning in Arabidopsis. [http://onlinelibrary.wiley.com/doi/10.1111/j.1365-313X.2010.04277.x/full Plant Journal 63:880] | |||
===07/10=== | |||
*mq - Juenger et al.: Exploring genetic and expression differences between physiologically extreme ecotypes: comparative genomic hybridization and gene expression studies of Kas-1 and Tsu-1 accessions of Arabidopsis thaliana. [http://www.ncbi.nlm.nih.gov/sites/entrez Plant, Cell and Environment 33:1268] | |||
*mq - Earley et al.: An endogenous F-box protein regulates ARGONAUTE1 in Arabidopsis thaliana. [http://www.ncbi.nlm.nih.gov/pubmed/20624295 Silence online early] | |||
*mq - Finet et al.: Parallel structural evolution of Auxin Response Factors in the angiosperms. [http://www.ncbi.nlm.nih.gov/pubmed/20626651 Plant Journal online early] | |||
*mq - Klingler et al.: ABA receptors: the START of a new paradigm in phytohormone signalling. [http://jxb.oxfordjournals.org/cgi/content/abstract/61/12/3199?etoc J Exp Botany 61:3199] | |||
*mq - An et al.: Ethylene-Induced Stabilization of ETHYLENE INSENSITIVE3 and EIN3-LIKE1 Is Mediated by Proteasomal Degradation of EIN3 Binding F-Box 1 and 2 That Requires EIN2 in Arabidopsis. [http://www.plantcell.org/cgi/content/abstract/tpc.110.076588v1?papetoc Plant Cell online early] | |||
*mq - Trujillo & Shirasu: Ubiquitination in plant immunity. [http://www.ncbi.nlm.nih.gov/pubmed/20471305 COPB 13:402] | |||
===06/10=== | |||
*cd - Zhang et al.: High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases [http://www.pnas.org/content/107/26/12028.abstract?etoc PNAS June 29, 2010 vol. 107 12028-12033 ] | |||
*cd - Osakabe et al.: Site-directed mutagenesis in Arabidopsis using custom-designed zinc finger nucleases [http://www.pnas.org/content/107/26/12034.abstract?etoc PNAS June 29, 2010 vol. 107 12034-12039] | |||
*ku - Ge et al.: Arabidopsis ROOT UVB SENSITIVE2/WEAK AUXIN RESPONSE1 Is Required for Polar Auxin Transport [http://http://www.plantcell.org/cgi/reprint/tpc.110.074195v1 Plant Cell 10.1105/tpc.110.074195] | |||
*cd - Strader et al.: Conversion of endogenous indole-3-butyric acid to indole-3-acetic acid drives cell expansion in Arabidopsis thaliana seedlings. [http://www.plantphysiol.org/cgi/reprint/pp.110.157461v1 Plant Phys] | |||
===04/10=== | |||
*cd - Pauwels et al.: NINJA connects the co-repressor TOPLESS to jasmonate signalling [http://www.nature.com/nature/journal/v464/n7289/abs/nature08854.html Nature 464, 788-791] | |||
*mq - Bomblies/Weigel: Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana. [http://www.ncbi.nlm.nih.gov/pubmed/20361058 PLoS Genetics 6:e1000890] | |||
*mq - Marin et al.: miR390, Arabidopsis TAS3 tasiRNAs, and Their AUXIN RESPONSE FACTOR Targets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth. [http://www.plantcell.org/cgi/content/abstract/tpc.109.072553v1?papetoc Plant Cell online early] | |||
*mq - Baudry et al.: F-Box Proteins FKF1 and LKP2 Act in Concert with ZEITLUPE to Control Arabidopsis Clock Progression. [http://www.ncbi.nlm.nih.gov/pubmed/20354196 Plant Cell online early] | |||
*mq - Soeno et al.: Auxin-biosynthesis inhibitors, identified by genomics-based approach, provide insights into auxin biosynthesis. [http://pcp.oxfordjournals.org/cgi/content/abstract/pcq032v1?etoc Plant Cell Physiol. online early] | |||
*mq - Laitinen/Weigel: Identification of a spontaneous frame shift mutation in a non-reference Arabidopsis thaliana accession using whole genome sequencing. [http://www.plantphysiol.org/cgi/content/abstract/pp.110.156448v1?papetoc Plant Phys online early] | |||
===03/10=== | |||
*ku - Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines [http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08800.html Nature advance online publication 24 March 2010] | |||
*cd - Wang et al.: Genome-wide analysis of primary auxin-responsive Aux/IAA gene family in maize (Zea mays. L.)[http://www.ncbi.nlm.nih.gov/pubmed/20232157 Mol Biol Rep. 2010 Mar 16. Epub ahead of print] | |||
*cd - Schlereth et al.: MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor.[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature08836.html Nature. 2010 Mar 10. [Epub ahead of print]] | |||
*mq - Krupinski and Jönsson: Modeling Auxin-regulated Development. [http://www.ncbi.nlm.nih.gov/pubmed/20182620?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=2 Cold Spring Harb Perspect Biol. 2:a001560] | |||
*mq - Jodi/Nemhauser: Do Trees Grow on Money? Auxin as the Currency of the Cellular Economy. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2828276/?tool=pubmed Cold Spring Harb Perspect Biol. 2:a001420] | |||
*mq - Normanly: Approaching cellular and molecular resolution of auxin biosynthesis and metabolism. [http://www.ncbi.nlm.nih.gov/pubmed/20182605?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=4 Cold Spring Harb Perspect Biol. 2:a001594] | |||
*mq - Scarpella/Tsiantis: Control of leaf and vein development by auxin. [http://www.ncbi.nlm.nih.gov/pubmed/20182604?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=5 Cold Spring Harb Perspect Biol. 2:a001511] | |||
*mq - Maron et al.: Two functionally distinct members of the MATE (multi-drug and toxic compound extrusion) family of transporters potentially underlie two major aluminum tolerance QTLs in maize. [http://www3.interscience.wiley.com/journal/123210379/abstract?CRETRY=1&SRETRY=0 Plant Journal 61:728] | |||
*mq - Mendez-Vigo/Alonso-Blanco: Temporal analysis of natural variation for the rate of leaf production and its relationship with flowering initiation in Arabidopsis thaliana. [http://www.ncbi.nlm.nih.gov/pubmed/20190039?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=1 J Exp Bot. online early] | |||
*mq - Ren et al.: RAS1, a quantitative trait locus for salt tolerance and ABA sensitivity in Arabidopsis. [http://www.ncbi.nlm.nih.gov/pubmed/20212128 PNAS online early] | |||
*mq - Schlereth/Weijers: MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor. [http://www.ncbi.nlm.nih.gov/pubmed/20220754 Nature online early] | |||
*mq - Ravi and Chan: Haploid plants produced by centromere-mediated genome elimination. [http://www.nature.com/nature/journal/v464/n7288/abs/nature08842.html Nature 464:615] | |||
===02/10=== | |||
*cd- Roudier et al.: Very-Long-Chain Fatty Acids Are Involved in Polar Auxin Transport and Developmental Patterning in Arabidopsis [http://www.plantcell.org/cgi/rapidpdf/tpc.109.071209v1 Plant Cell online early] | |||
*cd- Eklund et al.: The Arabidopsis thaliana STYLISH1 Protein Acts as a Transcriptional Activator Regulating Auxin Biosynthesis [http://www.plantcell.org/cgi/rapidpdf/tpc.108.064816v1 Plant Cell online early] | |||
*cd- Yi et al.: A basic helix-loop-helix transcription factor controls cell growth and size in root hairs. [http://www.nature.com/ng/journal/vaop/ncurrent/abs/ng.529.html Nat Gen 2010] | |||
*mq - Broekgaarden et al.: Intraspecific variation in herbivore community composition and transcriptional profiles in field-grown Brassica oleracea cultivars. [http://jxb.oxfordjournals.org/cgi/reprint/61/3/807?etoc Journal of Exp. Botany 61:807] | |||
*mq - Ishikawa et al.: A major quantitative trait locus for increasing cadmiumspecific concentration in rice grain is located on the short arm of chromosome 7. [http://jxb.oxfordjournals.org/cgi/reprint/61/3/923?etoc Journal of Exp. Botany 61:923–934] | |||
*mq - Proost et al.: PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants. [http://www.plantcell.org/cgi/content/abstract/21/12/3718?etoc Plant Cell 21:3718] | |||
*mq - de Smet et al.: Bimodular auxin response controls organogenesis in Arabidopsis. [http://www.pnas.org/content/early/2010/01/22/0915001107.abstract?etoc= PNAS online early] | |||
*mq - Kang et al.: PDR-type ABC transporter mediates cellular uptake of the phytohormone abscisic acid. [http://www.pnas.org/content/early/2010/01/20/0909222107.abstract?etoc= PNAS online early] | |||
*mq - Lohmann et al.: SLOW MOTION Is Required for Within-Plant Auxin Homeostasis and Normal Timing of Lateral Organ Initiation at the Shoot Meristem in Arabidopsis. [http://www.plantcell.org/cgi/content/abstract/tpc.109.071498v1?papetoc Plant Cell online early] | |||
*mq - Middleton et al.: Mathematical Modelling of the Aux/IAA Negative Feedback Loop. [http://www.ncbi.nlm.nih.gov/pubmed/20135237?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=1 Bull Math Biol. online early] | |||
*mq - Das et al.: A composite transcriptional signature differentiates responses towards closely related herbicides in Arabidopsis thaliana and Brassica napus. [http://www.springerlink.com/content/xr828x610r866145/ Plant Mol Biol 72:545-556] | |||
*mq - Vidal et al.: Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana. [http://www.ncbi.nlm.nih.gov/pubmed/20142497?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=1 PNAS online early] | |||
*mq - The International Brachypodium Initiative: Genome sequencing and analysis of the model grass Brachypodium distachyon. [http://www.nature.com/nature/journal/v463/n7282/pdf/nature08747.pdf Nature 463:763] | |||
*mq - Foxe and Wright: Signature of diversifying selection on members of the pentatricopeptide repeat protein family in Arabidopsis lyrata. [http://www.ncbi.nlm.nih.gov/pubmed/19635937?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=2 Genetics 183:663] | |||
*mq - Huang et al.: The earliest stages of adaptation in an experimental plant population: strong selection on QTLS for seed dormancy. [http://www.ncbi.nlm.nih.gov/pubmed/20149097?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=1 Mol Ecol online early] | |||
*mq - Zhao and Hasenstein: Physiological interactions of antiauxins with auxin in roots. [http://www.ncbi.nlm.nih.gov/pubmed/20149478?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=2 J Plant Physiol online early] | |||
*mq - Son et al.: In vitro and in vivo interaction of AtRma2 E3 ubiquitin ligase and auxin binding protein 1. [http://www.ncbi.nlm.nih.gov/pubmed/20152813?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=3 Biochem Biophys Res Commun. online early] | |||
*mq - Amoutzias et al.: Posttranslational regulation impacts the fate of duplicated genes. [http://www.pnas.org/content/107/7/2967.abstract?etoc PNAS 107:2967] | |||
* mq - Fraser et al.: Evidence for widespread adaptive evolution of gene expression in budding yeast. [http://www.pnas.org/content/107/7/2977.abstract?etoc PNAS 107:2977] | |||
*mq - Platt/Borevitz: The Scale of Population Structure in Arabidopsis thaliana. [http://www.ncbi.nlm.nih.gov/pubmed/20169178?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=1 PLoS Genet 6:e1000843.] | |||
*mq - Lim et al.: Auxin response factor 2 (ARF2) plays a major role in regulating auxin-mediated leaf longevity. [http://www.ncbi.nlm.nih.gov/pubmed/20164142?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=4 J Exp Bot online early] | |||
*mq - Ansell et al.: Population structure and historical biogeography of European Arabidopsis lyrata. [http://www.ncbi.nlm.nih.gov/pubmed/20160758?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=1 Heredity online early] | |||
===01/10=== | |||
*ku - Ossowski/Weigel/Lynch: The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana. [http://www.sciencemag.org/cgi/content/abstract/327/5961/92 Science 327:92-94] | |||
*cd - Giakountis et al.: Distinct Patterns of Genetic Variation Alter Flowering Responses of Arabidopsis Accessions to Different Daylengths [http://www.plantphysiol.org/cgi/content/abstract/152/1/177?etoc Plant Physiol. 2010;152 177-191] | |||
*mq - Proost et al.: PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants [http://www.plantcell.org/cgi/content/abstract/tpc.109.071506v1?papetoc Plant Cell online early] | |||
*mq - Rutter et al.: SPONTANEOUS MUTATION PARAMETERS FOR ARABIDOPSIS THALIANA MEASURED IN THE WILD [http://www.ncbi.nlm.nih.gov/pubmed/20030706?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=1 Evolution online early] | |||
*mq - Jha et al.: Variation in salinity tolerance and shoot sodium accumulation in Arabidopsis ecotypes linked to differences in the natural expression levels of transporters involved in sodium transport [http://www.ncbi.nlm.nih.gov/pubmed/20040066?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=1 Plant Cell Environment online early] | |||
*mq - Joosen et al.: Germinator: A software package for high-throughput scoring and curve fitting of Arabidopsis seed germination [http://www.ncbi.nlm.nih.gov/pubmed/20042024?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=1 Plant Journal online early] | |||
*mq - Krecek et al.: The PIN-FORMED (PIN) protein family of auxin transporters [http://www.ncbi.nlm.nih.gov/pubmed/20053306?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=2 Genome Biology online early] | |||
*mq - Parry/Estelle: Complex regulation of the TIR1/AFB family of auxin receptors [http://www.ncbi.nlm.nih.gov/pubmed/20018756?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1 PNAS online early] | |||
*mq - Kieffer/Kepinski: Defining auxin response contexts in plant development. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VS4-4XSTPF5-1&_user=4832532&_coverDate=02%2F28%2F2010&_rdoc=7&_fmt=high&_orig=browse&_srch=doc-info%28%23toc%236252%232010%23999869998%231611126%23FLA%23display%23Volume%29&_cdi=6252&_sort=d&_docanchor=&_ct=21&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=0dbdf99dd3c84b2b674ca8dbd17659d3 Current Opinion Plant Biol 13:12-20]] | |||
*mq - Kagale et al.: Genome-wide analysis of Ethylene responsive element binding factor-associated Amphiphilic Repression (EAR) motif-containing transcriptional regulators in Arabidopsis. [http://www.plantphysiol.org/cgi/content/abstract/pp.109.151704v1?papetoc Plant Phys online early] | |||
*mq - Mustroph et al.: Cross-kingdom comparison of transcriptomic adjustments to low oxygen stress highlights conserved and plant-specific responses. [http://www.plantphysiol.org/cgi/content/abstract/pp.109.151845v1?papetoc Plant Phys online early] | |||
*mq - Katori et al.: Dissecting the genetic control of natural variation in salt tolerance of Arabidopsis thaliana accessions. [http://jxb.oxfordjournals.org/cgi/content/abstract/erp376v1?etoc Journal Exp Bot online early] | |||
===12/09=== | |||
*cd - Strader&/Beisner/Bartel: Silver Ions Increase Auxin Efflux Independently of Effects on Ethylene Response [http://www.plantcell.org/cgi/content/abstract/21/11/3585?etoc Plant Cell 21: 3585-3590] | |||
*mq - Kieffer/Kepinski: Defining auxin response contexts in plant development. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VS4-4XSTPF5-1&_user=4832532&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=8ad2e55b1a3b2d228e29e5a6d2158516 Current Opinion in Plant Biology 13:1] | |||
*mq - Nishimura et al.: Structural Mechanism of Abscisic Acid Binding and Signaling by Dimeric PYR1. [http://www.ncbi.nlm.nih.gov/pubmed/19933100?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=1 Science online early] | |||
*mq - Santiago et al.: The abscisic acid receptor PYR1 in complex with abscisic acid. [http://www.ncbi.nlm.nih.gov/pubmed/19898494?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=3 Nature 462:665-8] | |||
*mq - Melcher et al.: A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors. [http://www.ncbi.nlm.nih.gov/pubmed/19898420?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4 Nature 462:602-8] | |||
*mq - Miyazono et al.: Structural basis of abscisic acid signalling. [http://www.ncbi.nlm.nih.gov/pubmed/19855379?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=5 Nature 462:609-14] | |||
*mq - Yin et al.: Structural insights into the mechanism of abscisic acid signaling by PYL proteins. [http://www.ncbi.nlm.nih.gov/pubmed/19893533?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=4 Nat Struct Mol Biol. 16:1230-6.] | |||
*mq - Fujii et al.: In vitro reconstitution of an abscisic acid signalling pathway. [http://www.ncbi.nlm.nih.gov/pubmed/19924127?itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum&ordinalpos=2 Nature 462:660-4] | |||
===11/09=== | |||
*mq - Sterlen/Vuylsteke: A Population Genomics Study of the Arabidopsis Core Cell Cycle Genes Shows the Signature of Natural Selection. [http://www.plantcell.org/cgi/content/abstract/tpc.109.067017v1?papetoc Plant Cell online early] | |||
*mq - Wingler et al.: QTL analysis for sugar-regulated leaf senescence supports flowering-dependent and -independent senescence pathways. [http://www.ncbi.nlm.nih.gov/pubmed/19878465?itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum&ordinalpos=1 New Phytologist online early] | |||
*mq - Maerkl and Quake: Experimental determination of the evolvability of a transcription factor. [http://www.ncbi.nlm.nih.gov/sites/entrez PNAS online early] | |||
*mq - Li et al.: The ARABIDOPSIS Accession Pna-10 Is a Naturally Occurring sng1 Deletion Mutant. [http://mplant.oxfordjournals.org/cgi/content/abstract/ssp090v1?etoc Molecular Plant online early] | |||
*mq - Guo et al.: Independent Recruitment of F Box Genes to Regulate Hermaphrodite Development during Nematode Evolution. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRT-4XFXPKX-4&_user=4832532&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=9d6023d444f166fb993c7c1d79b5d6b3 Current Biology 19:1853-1860] | |||
*mq - Kliebenstein: Systems Biology uncovers the foundation of natural genetic diversity. [http://www.plantphysiol.org/cgi/content/abstract/pp.109.149328v1?papetoc Plant Phys online early] | |||
===10/09=== | |||
*mq - Angelovici et al.: Deciphering transcriptional and metabolic networks associated with lysine metabolism during Arabidopsis seed development. [http://www.plantphysiol.org/cgi/content/abstract/pp.109.145631v1?papetoc Plant Phys online early] | |||
*mq - Matsuno et al.: Evolution of a Novel Phenolic Pathway for Pollen Development. [http://www.sciencemag.org/cgi/content/abstract/325/5948/1688?sa_campaign=Email/toc/25-September-2009/10.1126/science.1174095 Science online early] | |||
*mq - Suzuki et al.: Differential expression and affinities of Arabidopsis gibberellin receptors can explain variation in phenotypes of multiple knock-out mutants. [http://www3.interscience.wiley.com/journal/122410005/abstract?CRETRY=1&SRETRY=0 Plant J. 60:48] | |||
*mq - Lewis/Spalding: Auxin transport into cotyledons and cotyledon growth depend similarly on the ABCB19 Multidrug Resistance-like transporter. [http://www3.interscience.wiley.com/journal/122441074/abstract Plant J. 60:91] | |||
*mq - Myles/Buckler: Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design [http://www.plantcell.org/cgi/content/abstract/21/8/2194?etoc Plant Cell 21:2194] | |||
*mq - Rawat/Harmer: REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways. [http://www.ncbi.nlm.nih.gov/pubmed/19805390?ordinalpos=1&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum PNAS 106:16883] | |||
*mq - Stich: Comparison of Mating Designs for Establishing Nested Association Mapping Populations in Maize and Arabidopsis thaliana. [http://www.ncbi.nlm.nih.gov/pubmed/19805816?ordinalpos=1&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum Genetics online early] | |||
*mq - Prusinkiewicz/Leyser: Control of bud activation by an auxin transport switch. [http://www.ncbi.nlm.nih.gov/pubmed/19805140?ordinalpos=2&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum PNAS online early] | |||
===09/09=== | |||
*mq - Zhou et al.: Evolutionary and Expression Signatures of Pseudogenes in Arabidopsis and Rice [http://www.plantphysiol.org/cgi/content/abstract/151/1/3?etoc Plant Phys 151:3] | |||
*mq - Tessadori et al.: Phytochrome B and histone deacetylase 6 control light-induced chromatin compaction in Arabidopsis thaliana. [http://www.ncbi.nlm.nih.gov/pubmed/19730687?ordinalpos=1&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum PLoS Genet 5:e1000638] | |||
*mq - Chan/Kliebenstein: Understanding the Evolution of Defense Metabolites in Arabidopsis thaliana Using Genome-Wide Association Mapping. [http://www.ncbi.nlm.nih.gov/pubmed/19737743?ordinalpos=2&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum Genetics online early] | |||
*mq - de Rybel et al.: The past, present and future of chemical biology in auxin research. [http://pubs.acs.org/doi/pdf/10.1021/cb9001624 ACS Chem Biol online early] | |||
*mq - van Zanten et al.: Hormone- and light-mediated regulation of heat-induced differential petiole growth in Arabidopsis thaliana. [http://www.plantphysiol.org/cgi/content/abstract/pp.109.144386v1?papetoc Plant Phys online early] | |||
===08/09=== | ===08/09=== | ||
*cd - Stavang et al.:Hormonal regulation of temperature-induced growth in Arabidopsis [http://www3.interscience.wiley.com/cgi-bin/fulltext/122519509/PDFSTART Plant Journal] | |||
*cd - Chapmann/Estelle: Mechanism of Auxin-Regulated Gene Expression in Plants [http://arjournals.annualreviews.org/doi/abs/10.1146/annurev-genet-102108-134148 Annual Reviews Genetics (liegt bei mir)] | |||
*mq - Strader and Bartel: The Arabidopsis PLEIOTROPIC DRUG RESISTANCE8/ABCG36 ATP Binding Cassette Transporter Modulates Sensitivity to the Auxin Precursor Indole-3-Butyric Acid. [http://www.plantcell.org/cgi/content/abstract/tpc.109.065821v1?papetoc Plant Cell online early] | *mq - Strader and Bartel: The Arabidopsis PLEIOTROPIC DRUG RESISTANCE8/ABCG36 ATP Binding Cassette Transporter Modulates Sensitivity to the Auxin Precursor Indole-3-Butyric Acid. [http://www.plantcell.org/cgi/content/abstract/tpc.109.065821v1?papetoc Plant Cell online early] | ||
*cd - Ibañes et al.:Brassinosteroid signaling and auxin transport are required to establish the periodic pattern of Arabidopsis shoot vascular bundles [http://www.pnas.org/content/106/32/13630.abstract?etoc PNAS] | |||
*mq - Myles/Buckler: Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design. [http://www.plantcell.org/cgi/content/abstract/tpc.109.068437v1?papetoc Plant Cell online early] | |||
*mq - French et al.: High-Throughput Quantification of Root Growth Using a Novel Image-Analysis Tool. [http://www.plantphysiol.org/cgi/content/abstract/150/4/1784?etoc Plant Phys online early] | |||
*mq - Schwartz/Weigel: Cis-regulatory Changes at FLOWERING LOCUS T Mediate Natural Variation in Flowering Responses of Arabidopsis thaliana. [http://www.ncbi.nlm.nih.gov/pubmed/19652183?dopt=Abstract Genetics online early] | |||
*mq - Ghandilyan/aarts: Genetic analysis identifies quantitative trait loci controlling rosette mineral concentrations in Arabidopsis thaliana under drought. [http://www.ncbi.nlm.nih.gov/pubmed/19656307?ordinalpos=1&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum New Phytologist online early] | |||
*mq - Pils and Heyl: Unraveling the evolution of cytokinin signaling. [http://www.plantphysiol.org/cgi/content/abstract/pp.109.139188v1?papetoc Plant Phys online early] | |||
*mq - Lokerse and Weijers: Auxin enters the matrix — assembly of response machineries for specific outputs. [http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VS4-4X1KC7S-2&_user=4832532&_coverDate=08%2F18%2F2009&_rdoc=1&_fmt=full&_orig=search&_cdi=6252&_sort=d&_docanchor=&view=c&_acct=C000065317&_version=1&_urlVersion=0&_userid=4832532&md5=8df4a34d8b2d994889b5680828b42217#bibl001 Current Opin Plant Biol online early] | |||
*mq - Vierstra: The ubiquitin-26S proteasome system at the nexus of plant biology. [http://www.ncbi.nlm.nih.gov/pubmed/19424292?ordinalpos=3&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum Nat Rev Mol Cell Biol. 2009, 10:385] | |||
*mq - Stavang et al.: Hormonal regulation of temperature-induced growth in Arabidopsis. [http://www.ncbi.nlm.nih.gov/pubmed/19686536?ordinalpos=1&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum Plant J online early] | |||
*mq - Birker et al.: A locus conferring resistance to Colletotrichum higginsianum is shared by four geographically distinct Arabidopsis accessions. [http://www.ncbi.nlm.nih.gov/pubmed/19686535?ordinalpos=1&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum Plant J online early] | |||
*mq - Chapman and Estelle: Mechanism of Auxin-Regulated Gene Expression in Plants. [http://www.ncbi.nlm.nih.gov/pubmed/19686081?ordinalpos=2&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum Annu Rev Genet online early] | |||
*mq - Sato and Yamamoto: What's the physiological role of Domain II-less Aux/IAA proteins? [http://www.landesbioscience.com/journals/psb/article/5994/ Plant Signaling & Behavior 3:496] | |||
*mq - Stepanova and Alonso: Ethylene signaling and response: where different regulatory modules meet. [http://www.ncbi.nlm.nih.gov/pubmed/19709924?ordinalpos=5&itool=Email.EmailReport.Pubmed_ReportSelector.Pubmed_RVDocSum Current Opin Plant Biol online early] | |||
*mq - Yan et al.: The Arabidopsis CORONATINE INSENSITIVE1 Protein Is a Jasmonate Receptor. [http://www.plantcell.org/cgi/content/abstract/tpc.109.065730v1?papetoc Plant Cell online early] | |||
===07/09=== | ===07/09=== |
Latest revision as of 00:21, 7 March 2012
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