Quint Lab:Back Door

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==resources==
==resources==
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*[[Quint_Lab:ordering | ordering]]<br>
*[[Quint_Lab:ordering | ordering]]<br>
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==papers/lab meetings/seminars==
==papers/lab meetings/seminars==
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==online tools==
==online tools==
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'''oligos:'''
'''oligos:'''
*[http://eu.idtdna.com/analyzer/Applications/OligoAnalyzer/Default.aspx?c=EU oligo analysis]
*[http://eu.idtdna.com/analyzer/Applications/OligoAnalyzer/Default.aspx?c=EU oligo analysis]
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*[http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi primer3]
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*[http://www.bioinformatics.nl/cgi-bin/primer3plus/primer3plus.cgi primer3plus]
*[http://www.fermentas.com/reviewer/app?page=DuplexAnalysis&service=page duplex analysis]
*[http://www.fermentas.com/reviewer/app?page=DuplexAnalysis&service=page duplex analysis]
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*[http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi blastn]
*[http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi blastn]
*[http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?PAGE=Proteins&PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on blastp]
*[http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?PAGE=Proteins&PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on blastp]
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*[http://nypg.bio.nyu.edu/vicogenta/ Vicogenta - comparing genomes to arabidopsis]
'''arabidopsis tools:'''
'''arabidopsis tools:'''
 +
*[http://www.labutils.de/ rootdetection - automatic measurements of seedling roots and hypocotyls]
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*[http://wi.cb.k.u-tokyo.ac.jp/cv/arabimarklet.html arabidopsis database collection]
*[http://www.arabidopsis.org/ tair]
*[http://www.arabidopsis.org/ tair]
*[http://arabidopsis.info/ nasc]
*[http://arabidopsis.info/ nasc]
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*[http://www.hort.purdue.edu/hort/facilities/greenhouse/101exp.shtml 101 ways to grow arabidopsis]
*[http://plantsubq.genomics.purdue.edu/ plants-ubq]
*[http://plantsubq.genomics.purdue.edu/ plants-ubq]
*[http://signal.salk.edu/ salk t-dnas]
*[http://signal.salk.edu/ salk t-dnas]
*[https://iii.genevestigator.ethz.ch/at/ genevestigator]
*[https://iii.genevestigator.ethz.ch/at/ genevestigator]
*[http://bbc.botany.utoronto.ca/ efp-browser/expression angler/etc.]
*[http://bbc.botany.utoronto.ca/ efp-browser/expression angler/etc.]
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*[http://www.expressionbrowser.com/ GEB - gene expression browser for arabidopsis]
*[http://www.weigelworld.org/resources/microarray/at-tax tiling array expression atlas]
*[http://www.weigelworld.org/resources/microarray/at-tax tiling array expression atlas]
*[http://www.arexdb.org/index.jsp arex]
*[http://www.arexdb.org/index.jsp arex]
*[http://mapman.mpimp-golm.mpg.de/ mapman]
*[http://mapman.mpimp-golm.mpg.de/ mapman]
*[http://wmd.weigelworld.org/cgi-bin/mirnatools.pl web mirna designer]
*[http://wmd.weigelworld.org/cgi-bin/mirnatools.pl web mirna designer]
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*[http://jsp.weigelworld.org/tileviz/tileviz.jsp tile viz]
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*[http://gbrowse.weigelworld.org/cgi-bin/gbrowse/attax/ tiling array express]
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*[http://1001genomes.org/ 1001 genomes]
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*[http://polymorph.weigelworld.org/cgi-bin/retrieve_snp.cgi POLYMORPH reseq SNPs]
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*[http://ahd.cbi.pku.edu.cn/ arabidopsis hormone database]
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*[http://www.jicgenomelab.co.uk/services/genotyping/markers.html JIC microsatellite mapping markers]
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*[http://nypg.bio.nyu.edu/vicogenta/ Vicogenta - comparing genomes to arabidopsis]
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*[http://amigo.geneontology.org/cgi-bin/amigo/term_enrichment AmiGO - Gene Ontology]
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*[http://bioinformatics.psb.ugent.be/plaza/ PLAZA]
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*[http://helix.wustl.edu/dcaps/dcaps.html dCAPS finder]
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*[http://polymorph.weigelworld.org/cgi-bin/retrieve_snp.cgi polymorph - reseq. snps]
*[http://polymorph.weigelworld.org/cgi-bin/retrieve_snp.cgi polymorph - reseq. snps]
*[http://www.atprimer.tsl.ac.uk/cgi-bin/form1.cgi atprimer ecotypes]
*[http://www.atprimer.tsl.ac.uk/cgi-bin/form1.cgi atprimer ecotypes]
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*[http://www.jicgenomelab.co.uk/services/genotyping/markers.html JIC microsatellite mapping markers]
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*[http://bbc.botany.utoronto.ca/markertracker/index.spy Marker Tracker]
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*[http://bergelson.uchicago.edu/a.thaliana-resources Bergelson A.thaliana Resources]
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*[http://www.onekp.com/ The 1kp project - 1000 plant genomes]
'''calculators:'''
'''calculators:'''
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*[http://www.sigmaaldrich.com/Area_of_Interest/Research_Essentials/Biological_Buffers/Key_Resources/BufferCalc/SigmaAldrich_Buffer_Calculator.html buffer calculator]
*[http://www.sigmaaldrich.com/Area_of_Interest/Research_Essentials/Biological_Buffers/Key_Resources/BufferCalc/SigmaAldrich_Buffer_Calculator.html buffer calculator]
*[http://www.sigmaaldrich.com/Life_Science/Molecular_Biology/PCR/Key_Resources/PCR_Tools.html pcr mastermix calculator]
*[http://www.sigmaaldrich.com/Life_Science/Molecular_Biology/PCR/Key_Resources/PCR_Tools.html pcr mastermix calculator]
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*[[Media:Stammloesung.swf|Konzrechner]]
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==white board==
==white board==
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*[http://192.124.243.170/wordpress AG Quint - Lab Blog]
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*[http://www.metablast.org/downloads - Meta!Blast real-time 3D action-adventure game to explore the vivid, dynamic world of a soybean plant cell - might be worth a try!]
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*[http://dfg-science-tv.de/ DFG Science TV]: Forscher stellen ihre eigenen Projekte vor
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*[http://www.thirteen.org/naturally-obsessed/ Naturally Obsessed: The making of a Scientist - documentary]
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*[http://trailblazing.royalsociety.org/? historical papers of the royal society]
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*[http://professorsciencemusic.googlepages.com/home professor science]
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*[http://bitesizebio.com/2007/09/10/free-pc-software-for-molecular-biologists/ free PC software for molecular biologists]
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*[http://bitesizebio.com/2009/06/22/six-important-factors-for-successful-reverse-transcription/ Six Important Factors for Reverse Transcription]
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*[http://www.youtube.com/watch?v=Er4MsAVs9hQ Video: Jede Zelle ...]
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*[http://www.spiegel.de/video/video-57928.html Video: GFP-tagged HIV infiziert T-Zelle]
*[http://www.youtube.com/watch?v=f6aU-wFSqt0&eurl=http://www.spiegel.de/wissenschaft/mensch/0,1518,575773,00.html The Large Hadron Rap]
*[http://www.youtube.com/watch?v=f6aU-wFSqt0&eurl=http://www.spiegel.de/wissenschaft/mensch/0,1518,575773,00.html The Large Hadron Rap]
*[http://bioinfo.noble.org/gene-atlas/index.php medicago gene expression atlas]
*[http://bioinfo.noble.org/gene-atlas/index.php medicago gene expression atlas]
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*[http://bitesizebio.com/2008/04/02/quick-and-dirty-screening-for-cloned-inserts/ quick and dirty] screening for cloned inserts
*[http://bitesizebio.com/2008/04/02/quick-and-dirty-screening-for-cloned-inserts/ quick and dirty] screening for cloned inserts
*awesome video → [http://www.studiodaily.com/main/technique/tprojects/6850.html cellular visions: the inner life of a cell]
*awesome video → [http://www.studiodaily.com/main/technique/tprojects/6850.html cellular visions: the inner life of a cell]
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*[http://www.jove.com Journal of Visualized Experiments]
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'''''arabidopsis'''''
'''''arabidopsis'''''
 +
*[[Media:southern.pdf | southern blot]]
*[[Quint_Lab:arabidopsis dna isolation - quick and dirty | arabidopsis dna isolation - quick and dirty]]
*[[Quint_Lab:arabidopsis dna isolation - quick and dirty | arabidopsis dna isolation - quick and dirty]]
*[[Quint_Lab:arabidopsis transformation | arabidopsis transformation]]
*[[Quint_Lab:arabidopsis transformation | arabidopsis transformation]]
*[[Quint_Lab:arabidopsis protoplast transformation | arabidopsis protoplast transformation]]
*[[Quint_Lab:arabidopsis protoplast transformation | arabidopsis protoplast transformation]]
 +
*[[Quint_Lab:arabidopsis rna isolation protocols (including siliques) | arabidopsis rna isolation protocols (including siliques)]]
*[[Quint_Lab:transient transformation and expression| transient transformation and expression]]
*[[Quint_Lab:transient transformation and expression| transient transformation and expression]]
*[[Quint_Lab:kanamycin selection of transgenic seeds | kanamycin selection of transgenic seeds]]
*[[Quint_Lab:kanamycin selection of transgenic seeds | kanamycin selection of transgenic seeds]]
 +
*[[Media:basta.pdf |  selection of transgenic seeds on basta plates ]]
*[[Quint_Lab:ems mutagenesis | ems mutagenesis]]
*[[Quint_Lab:ems mutagenesis | ems mutagenesis]]
*[[Quint_Lab:ats plates | ats plates]]
*[[Quint_Lab:ats plates | ats plates]]

Revision as of 05:39, 24 February 2012

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resources

papers/lab meetings/seminars

online tools

dna/protein analysis:


oligos:


blasts/alignments:


arabidopsis tools:


medicago tools:


natural variation/polymorphisms:

calculators:

white board


lab protocols

→ check also openwetware protocols

e. coli

agros

arabidopsis

yeast
→ for general yeast handling follow Clontech Yeast Protocols Handbook
→ for Y2H follow Clontech Matchmaker Library Construction & Screening Kit


general


Personal tools