Quint Lab:Back Door: Difference between revisions

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==tools==
==tools==
'''dna analysis'''
'''dna/protein analysis:'''
*[http://www-bimas.cit.nih.gov/molbio/readseq/ sequence converter]
*[http://bio.dfci.harvard.edu/Tools/SMS/filter_dna.html dna clean-up]
*[http://bio.dfci.harvard.edu/Tools/SMS/filter_prot.html protein clean-up]
*[http://www.bioinformatics.org/sms/rev_comp.html reverse complement]
*[http://www.expasy.ch/tools/dna.html translate dna]
*[http://www.expasy.ch/tools/pi_tool.html predict protein mw]
*[http://myhits.isb-sib.ch/cgi-bin/motif_scan protein motif scan]
*[http://tools.neb.com/NEBcutter2/index.php restriction analysis]<br>
 
 
'''oligos:'''
*[http://eu.idtdna.com/analyzer/Applications/OligoAnalyzer/Default.aspx?c=EU oligo analysis]
*[http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi primer3]
*[http://www.sigmaaldrich.com/Life_Science/Molecular_Biology/PCR/Key_Resources/PCR_Tools.html pcr mastermix calculator]<br>
 
 
'''blasts/alignments:'''
*[http://www.bioinformatics.org/sms2/pairwise_align_dna.html pairwise dna alignment]
*[http://www.expasy.ch/tools/sim-prot.htmlpairwise protein alignment]
*[http://www.ncbi.nlm.nih.gov/BLAST/bl2seq/wblast2.cgi blast alignment]
*[http://www.ebi.ac.uk/Tools/clustalw/index.html clustalw - multiple alignments]
*[http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi blastn]
*[http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?PAGE=Proteins&PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on blastp]
 
 
'''arabidopsis tools:'''
*[http://arabidopsis.info/ nasc]

Revision as of 02:19, 26 March 2008

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tools

dna/protein analysis:


oligos:


blasts/alignments:


arabidopsis tools:

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