Protein motifs: Difference between revisions
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* [http://ca.expasy.org/prosite/ Prosite] - database of families and domains. Search engine for pasting and searching sequences | * [http://ca.expasy.org/prosite/ Prosite] - database of families and domains. Search engine for pasting and searching sequences | ||
* [http://www.ebi.ac.uk/InterProScan/ Interproscan] - search interface to the Interpro database of protein motifs | * [http://www.ebi.ac.uk/InterProScan/ Interproscan] - search interface to the Interpro database of protein motifs | ||
* [http://bioware.ucd.ie/~compass/biowareweb/Server_pages/slimsearch3.php SLiMSearch] searches for occurrences of pre-defined motifs in protein sequences. SLiMSearch uses sequence context in terms of structural disorder and evolutionary conservation to mask input proteins and/or rank motif occurrences | |||
Revision as of 02:31, 30 June 2015
Search tools for protein motifs:
- PRINTS - Protein motifs fingerprint database
- ProDom - Protein domain database
- Prosite - database of families and domains. Search engine for pasting and searching sequences
- Interproscan - search interface to the Interpro database of protein motifs
- SLiMSearch searches for occurrences of pre-defined motifs in protein sequences. SLiMSearch uses sequence context in terms of structural disorder and evolutionary conservation to mask input proteins and/or rank motif occurrences
