Proportal

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Revision as of 17:41, 30 January 2012

Image:BioMicroCenter-header6.jpg

ProPortal Prochlorococcus Portal is a web analytical tool for Prochlorococcus, a model system for Integrative Systems Biology.

The information provided here is for the general purpose of user contribution and especially collaboration. While the lab members may have access to their internal secure wiki's, however, people will benefit from sharing the information and maintaining a collaborative environment for sustainable development.

Contents

References

Project Management

Schedule
Timelines Plan Status Comments
Jul 22, 2011 Modification of Proportal DB Schema. Re-create all tables in a new database with all the missing foreign keys and their cascade properties. The new Proportal DB Schema has been created by adding all missing foreign keys in the current version. A number of errors are to be fixed in next week to synchronize the datasets stored in the development and production databases. Add your comments
Jul 29, 2011 Update of datasets in Proportal public website. Migrate/merge all datasets stored in the development and production databases. Verify the integrity and consistency between the development and production databases and websites. Refer to the Release Notes for a number of issues resolved. Add your comments
Aug 5, 2011 Modification of cluster analysis using static/manual processing. Refer to the Release Notes for a number of issues resolved. Add your comments
Aug 15, 2011 Due date for submitting the database paper Refer to the To-do List for a number of issues that should be addressed before the submission. Finally, the manuscirpt was submitted on time! Add your comments
Aug 31, 2011 The GIT repository for version control and the wiki server for Proportal helps, user feedback, and data uploading etc. Refer to the Release Notes for a number of issues resolved. Add your comments
Oct 31, 2011 Automation of cluster analysis using dynamic processing and network visualization. Refer to the Release Notes for a number of issues resolved. Add your comments
Nov 21, 2011 The Proportal paper is out. Full Text: http://nar.oxfordjournals.org/cgi/content/full/gkr1022 Add your comments
Dec 31, 2011 Finish COG cluster pipeline. Finally, the COG cluster pipeline is working for new genomes added into Proportal development database. Add your comments

To-do List

For the detail of current issues that have been identified, refer to the To-do List.

Proportal DB Schema

The new Proportal DB Schema is created by adding all the missing foreign keys back into the database. Some orphan records have been identified from this process and will be fixed/removed from next release of Proportal.

Release Notes

Some issues in the current version of Proportal have been resolved. Refer to the Release Notes for more details.

Strain Discussion

This section is devoted to the discussion on issues related to various strains stored in Proportal DB.

Frequently Asked Questions

This section provides answers to some frequently asked questions.

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