Peyton:Internal: Difference between revisions

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__NOTOC__
==Lab Meetings==
==Lab Meetings==
*[[Peyton:Lab Meeting Schedule Fall 2014|'''Lab Meeting Schedule: Fall 14''']]<br>
*[[Peyton:Lab Meeting Schedule Spring 2021|'''Lab Meeting Schedule: Spring 21''']]


*[[Peyton:Lab Meeting Schedule Summer 2014|'''Lab Meeting Schedule: Summer 14''']]<br>
*[[Peyton:Lab Meeting Schedule Fall 2020|'''Lab Meeting Schedule: Fall 20''']]


*[[Peyton:Lab Meeting Schedule Spring 2014|'''Lab Meeting Schedule: Spring 14''']]<br>
*[[Peyton:Lab Meeting Schedule Summer 2020|'''Lab Meeting Schedule: Summer 20''']]


*[[Media:Spring 2013 Peyton Lab Undergraduate Meeting Schedule.pdf |Undergraduate Lab Meeting Schedule: Spring '13]]<br>
*[[Peyton:Lab Meeting Schedule Spring 2020|'''Lab Meeting Schedule: Spring 20''']]


*[[Peyton:Lab Meeting Schedule Spring 2013|'''Lab Meeting Schedule: Spring 13''']]<br>
*[[Peyton:Old Lab Meetings|'''Older Lab Meetings''']]<br>


*[[Peyton:Lab Meeting Schedule Fall 2012|'''Lab Meeting Schedule: Fall 12''']]<br>
*[[Media:Peyton_Meeting_Format.jpg |How to format your group meeting presentation]]<br>


*[[Peyton:Lab Meeting Schedule Summer 12|'''Lab Meeting Schedule: Summer 12''']]<br>
*[[Media:Peyton_Lab_slide_Master.pptx.zip | Peyton Lab master 4:3]]<br>


*[[Peyton:Old Lab Meetings|'''Older Lab Meetings''']]<br>
*[[Media:Peyton_Lab_slide_Master.pptx.zip | Peyton Lab master 16:9]]<br>


*[[Media:Peyton_Meeting_Format.jpg |How to format your group meeting presentation]]<br>
==Data==
 
*[[Peyton:Polio et al., Lung biomechanics|'''Polio et al., Lung biomechanics''']]<br>
==Reviews from Group Meetings==
*[[Media:Lab_Overview_spring2013.pptx |Summary of lab guidelines, Shelly Peyton]]<br>
*[[Media:Biostats.pptx |Statistics For Biological Sciences, Will Herrick]]<br>
*[[Media:Invadopodia_Review.ppt |Lauren's Invadopodia Review]]<br>
*[[Media:JC DR.pptx |Dannielle's Live Cell Imaging of Focal Adhesions Review]]<br>
*[[Media:Thuy's Rho family GTPases review.pptx |Thuy's Rho family GTPases review]]<br>
*[[Media:TNBC_review.pptx‎  |Triple Negative Breast Cancer Treatment Review, Lauren Barney]]<br>
*[[Media:Adenovirus.pptx‎  |Recombinant Adenovirus Review, Will Herrick]]<br>
*[[Media:Jansen_MMP.pptx‎ |Matrix Metalloproteinases, Lauren Jansen]]<br>
*[[Media:Review_of_3D_PEG_hydrogels.pptx‎  |PEG Hydrogels Review, Lauren Jansen]]<br>
*[[Media:Proteomics of tissue tropism.pptx‎  |Proteomics of Tissue Tropism, Lauren Barney]]<br>
*[[Media:QFM.pptx‎  |Light Microscopy, Lauren Jansen]]<br>


== Fellowship Opportunities ==
== Fellowship Opportunities ==
Here are fellowship possibilities for grad students and post-docs in the Peyton lab.  Alumni or current members that have had these fellowships are listed for you to contact. <br>
Here are fellowship possibilities for grad students and post-docs in the Peyton lab.  Alumni or current members that have had these fellowships are listed for you to contact. <br>
[https://research.jhu.edu/funding-opportunities/graduate/ Links to several opportunities, updated often]<br>
[http://www.nsfgrfp.org/ NSF GRFP] won by Max Nowak and Alyssa Schwartz<br>
[http://www.nsfgrfp.org/ NSF GRFP] won by Max Nowak and Alyssa Schwartz<br>
[http://www.umass.edu/cbi/traineeships.html UMass NIH CBI T32] won by Lauren Barney<br>
[http://www.umass.edu/cbi/traineeships.html UMass NIH CBI T32] won by Lauren Barney and Elizabeth Brooks<br>
[https://btp.umass.edu/traineeships/ UMass NIH BTP T32] won by Ning-Hsuan Tseng<br>
[http://www.smls-nrt.org UMass NSF SMLS-NRT]<br>
[http://ndseg.asee.org/ NDSEG]<br>
[http://ndseg.asee.org/ NDSEG]<br>
[http://grants.nih.gov/grants/funding/ac_search_results.htm?text_curr=f31&Search_Type=Activity NIH F31]<br>
[http://grants.nih.gov/grants/funding/ac_search_results.htm?text_curr=f31&Search_Type=Activity NIH F31]<br>
[http://grants.nih.gov/training/nrsa.htm NIH F32] won by Shelly Peyton<br>
[http://grants.nih.gov/training/nrsa.htm NIH F32] won by Shelly Peyton<br>


==Lab Duties==
==Lab Duties==
*[[Media:PeytonLabTasks2.docx |Lab Duty List]]<br>
*[[Media:PeytonLabTasks2018F.pdf |Lab Duty List]]<br>


==Protocols==
==Protocols==
'''General'''
'''General'''
*[[Media:Peyton_Exit.doc  |Lab Exit Policy]]<br>
*[[Media:Peyton_Exit.doc  |Lab Exit Policy]]<br>
*[[Media:Peyton_DataSharing.doc |Data Storage Protocol]]<br>
*[[Media:Peyton_DataSharing.pdf |Data Storage Protocol]]<br>
*[[Media:Peyton_Writing.doc  |Manuscript Writing Guide]]<br>
*[[Media:WritingGuideChecklist.docx |Writing Guide Checklist]]<br>
*[[Media:TwoColumnTemplate.docx |Two Column Template]]<br>
*[[Media:Peyton_Mouse.docx  |Mouse Experiment Guide]]<br>
*[[Media:20170315_FigureChecklist.docx |Figures/Tables Checklist]]<br>
*[[Media:Updating_OpenWetWare.pdf |Updating OpenWetWare]]<br>
*[[Media:Biological Materials Shipping Protocol.pdf |Shipping Biological Materials]]<br>
*[[Media:MTA Shipping Protocol.pdf |Using Material Transfer Agreements]]<br>
*[[Media:3D_Printing_Protocol.pdf |Lulzbot 3D Printer]]<br>
*[[Media:FreeCAD protocol for 3D Printing.pdf |Using FreeCAD to Create 3D Printable Objects]]<br>
*[[Media:FIJI_(ImageJ)_Guidelines.pdf |Guidelines for using FIJI (ImageJ)]]<br>
*[[Media:Access_the_Peyton_Lab_Server_Protocol.pdf |Accessing Peyton Lab Server]]<br>


'''Mammalian Cell Culture'''
'''Mammalian Cell Culture'''
*[[Media:Peyton_Feeding.doc  |Feeding Cells]]<br>
*[[Media:Peyton_Feeding_Adherent_Cells.doc  |Feeding Cells]]<br>
*[[Media:Peyton_Splitting.doc |Splitting Cells]]<br>
*[[Media:Peyton_Splitting.doc |Splitting Cells]]<br>
*[[Media:Peyton_Freezing.doc |Freezing Cells]]<br>
*[[Media:Peyton_Freezing.doc |Freezing Cells]]<br>
*[[Media:Spheroid-Culture_Protocol.docx‎ |Spheroid Culture]]<br>
*[[Media:Spheroid-Recovery_Protocol.docx |Spheroid Recovery]]<br>
*[[Media:Extraction_Buffer.docx | Cell Extraction from ECM by Sam Polio]]<br>
*[[Media:Macrophage_Isolation_Protocol.docx | Macrophage Isolation from Mice]]<br>
*[[Media:Cell_Staining_(Ki67_&_live-dead).docx | Cell Staining]]<br>
*[[Media:Primary_Ovarian_Cancer_Ascites_Culture_for_Drug_Screening_Experiments_EB.pdf  | Primary Ovarian Cancer Ascites Culture for Drug Screening Experiments]]<br>
*[[Media:Making cell subclones Protocol.pdf | Making Cell Subclones]]<br>


'''Chemistry'''
'''Chemistry'''
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*[[Media:Peyton_PEGDA.doc  |PEG Acrylation]]<br>
*[[Media:Peyton_PEGDA.doc  |PEG Acrylation]]<br>
*[[Media:Peyton_Adsorption.doc |Protein Adsorption on 96-well plates]]<br>
*[[Media:Peyton_Adsorption.doc |Protein Adsorption on 96-well plates]]<br>
*[[Media:APTES-DSC_protocol_7-11-16.docx‎ |APTES-DSC Coverslips, Lauren Barney]]<br>
*[[Media:APTES_DSC_protocol_011618.pdf |APTES-DSC Coverslips & 96-well plates]]<br>
'''Peptide Synthesis'''
*[[Media:Peptide Synthesis_ANK_20190506.pdf | Solid phase peptide synthesis by Aritra Nath Kundu]]<br>
*[[Media:HPLC_protocol_for_peptide_purification_by_Sualyneth_Galarza.pdf | HPLC for peptide purification by Sualyneth Galarza]]<br>
*[[Media:MALDI_protocol.pdf |MALDI for peptide characterization by Maria Gencoglu]]<br>


'''Hydrogels'''
'''Hydrogels'''
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*[[Media:Peyton_PAA.doc |Polyacrylamide Gels]]<br>
*[[Media:Peyton_PAA.doc |Polyacrylamide Gels]]<br>
*[[Media:PAA_gels_on_coverslips.docx |Polyacrylamide gels on coverslips for microscopy]]<br>
*[[Media:PAA_gels_on_coverslips.docx |Polyacrylamide gels on coverslips for microscopy]]<br>
*[[Media:PEG-PC_Gel_Protocol_32812.docx‎ |PEG-PC Gels on cover slips]]<br>
*[[Media:PEG-PC_Gel_Protocol.docx |PEG-PC Gels on Coverslips or 96-well plates]]<br>
*[[Media:PEG_PC_Gel_Protocol.pdf  |PEG-PC Gels on Coverslips or 96-well plates, updated 8/28/17]]<br>
*[[Media:PEG-MAL_Hydrogel_protocol_(1).docx‎ ‎|3D PEG-MAL Gels]]<br>
*[[Media:Proteins_peptide_functionalization_of_PEG-PC_gels_on_coverslips_or_96-well_plates.pdf ‎|Protein/peptide functionalization of PEG-PC gels]]<br>
*[[Media:RNA extraction from gels_HK_20170918_v8.pdf |RNA extraction from PEG hydrogels]]<br>


'''Microscopy'''
'''Microscopy and Analysis'''
*[[Media:Zeiss_Vivatome_Users_Guide.docx  |Vivatome User's Guide]]<br>
*[[Media:Zeiss_Vivatome_Users_Guide.docx  |Vivatome User's Guide]]<br>
*[[Media:Vivatome_Log_book.xlsx  |Vivatome Log Sheets]]<br>
*[[Media:Vivatome_Log_book.xlsx  |Vivatome Log Sheets]]<br>
*[[Media:IMARIS_tracking.docx  |Tracking cells in Imaris by D. Ryman]]<br>
*[[Media:IMARIS_tracking_LEB.docx  |Tracking cells in Imaris by D. Ryman, L. Barney]]<br>
*[[Media:ImageJ_Kymograph_instructions.pptx |Making Kymographs in ImageJ]]<br>
*[[Media:Manual_Tracking_in_ImageJ.pptx |Manual Tracking for Migration in ImageJ]]<br>
*[[Media:Invasion Assay.docx |Boyden Chamber Invasion Assay]]<br>
*[[Media:Microscopy Guidelines_2.pdf |Microscope Guidelines by Carey Dougan]]<br>
*[[Media:FIJIReviewGroupMeeting.pdf | FIJI Overview by Carey Dougan and Aritra Nath Kundu]]<br>


'''MAGPix'''
'''Molecular Biology'''
*[[Media:MAGPix_Assay_Notes.docx |MAGPix User's Guide]]<br>
*[[Media:MAGPix_Assay_Notes.docx |MAGPix User's Guide]]<br>
*[[Media:Western Blot protocol.docx |Western Blot Protocol by Alyssa Schwartz]]<br>
*[[Media:Manganare Phage Display.pdf |Phage Display Protocol by Marcos Manganare]]<br>
*[[Media:WXS_Protocol.docx‎|Whole Exome Sequencing Protocol by Alyssa Schwartz]]<br>
*[[Media:QPCR_Protocol_by_Sualyneth_Galarza.pdf|QPCR protocol by Sualyneth Galarza]]<br>
'''Mechanical Testing'''
*[[Media:Lung_Mechanical_Testing_Procedures.docx |Mechanical Testing for Cavitation, Uniaxial Testing, & Rheology by Sam Polio]]<br>
*[[Media:PEG-Maleimide mechanical testing (CAT)_HK_20180507_v3.pdf |Contact Adhesion Testing (CAT) for PEG-Maleimide hydrogels]]<br>


'''ImageJ'''
'''Microcontact Printing'''
*[[Media:ImageJ_Kymograph_instructions.pptx |Making Kymographs in ImageJ]]<br>
*[[Media:Procedure_for_Subtractive_Stamping.docx | Subtractive Printing by Sam Polio]]<br>
*[[Media:Manual_Tracking_in_ImageJ.pptx |Manual Tracking for Migration in ImageJ]]<br>
*[[Media:Protocol_for_Microcontact_Printing_Fibronectin.docx‎ | Microcontact Printing Fibronectin by Sam Polio]]<br>
 
'''MATLAB Codes'''
*[[Media:ProPro.m | Proliferation Counter from Barney et al., 2017 Manuscript ‎]]
*Traction Force Microscopy Codes [https://github.com/PeytonLab/3DTFM link]<br>
*[[Media:FBR_heatmap_and_dendrogram.pdf | Heat map clustering Jansen et al., 2018 Manuscript ‎]]
 
'''Automated Liquid Handling Robotics'''
*[[Media:Basic Biomek Protocol.pdf | Basic Biomek Protocol]]<br>


== Important Dates ==
== Important Dates ==
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*[[Peyton:Tanglewood Summer 11|'''Tanglewood Summer 11''']]<br>
*[[Peyton:Tanglewood Summer 11|'''Tanglewood Summer 11''']]<br>
[[File:LabChicken.jpg‎|200px|Description of image]]


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Latest revision as of 10:03, 3 June 2022

Home                                                                                      Internal   


Lab Meetings

Data

Fellowship Opportunities

Here are fellowship possibilities for grad students and post-docs in the Peyton lab. Alumni or current members that have had these fellowships are listed for you to contact.
Links to several opportunities, updated often
NSF GRFP won by Max Nowak and Alyssa Schwartz
UMass NIH CBI T32 won by Lauren Barney and Elizabeth Brooks
UMass NIH BTP T32 won by Ning-Hsuan Tseng
UMass NSF SMLS-NRT
NDSEG
NIH F31
NIH F32 won by Shelly Peyton

Lab Duties

Protocols

General

Mammalian Cell Culture

Chemistry

Peptide Synthesis

Hydrogels

Microscopy and Analysis

Molecular Biology

Mechanical Testing

Microcontact Printing

MATLAB Codes

Automated Liquid Handling Robotics

Important Dates

AIChE
October 28th-November 2nd, 2012, Pittsburgh, PA
link

Group Photos

Description of image