Pecinka lab:Publications

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<h3><font style="color:#FF8C00;">Publications</font></h3>
<h3><font style="color:#FF8C00;">Publications</font></h3>
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'''2014'''
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*Pecinka A, Liu C.-H. Drugs for Plant Chromosome and Chromatin Research. Cytogenetic Genome Research DOI: 10.1159/000360774 (2014). [http://www.karger.com/Article/FullText/360774 Full text]
*Baubec T, Finke A, Mittelsten Scheid O, Pecinka A. Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis. EMBO Reports doi: 10.1002/embr.201337915 (2014). [http://embor.embopress.org/content/early/2014/02/20/embr.201337915 Full text]
*Baubec T, Finke A, Mittelsten Scheid O, Pecinka A. Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis. EMBO Reports doi: 10.1002/embr.201337915 (2014). [http://embor.embopress.org/content/early/2014/02/20/embr.201337915 Full text]
 +
'''2013'''
*Pecinka A, Abdelsamad A, Vu GTH. Hidden genetic nature of epigenetic natural variation in plants. Trends in Plant Science 18:625-632 (2013) [http://www.cell.com/trends/plant-science/abstract/S1360-1385%2813%2900145-3 Full text]  
*Pecinka A, Abdelsamad A, Vu GTH. Hidden genetic nature of epigenetic natural variation in plants. Trends in Plant Science 18:625-632 (2013) [http://www.cell.com/trends/plant-science/abstract/S1360-1385%2813%2900145-3 Full text]  
 +
'''2012'''
*de Meaux J, Pecinka A. The Arabidopsis genus: An emerging model to elucidate the molecular basis of interspecific differences in transposable element activity. Mobile Genetic Elements 2:142-144 (2012). [[media:deMeaux-MES-2012.pdf| PDF]]
*de Meaux J, Pecinka A. The Arabidopsis genus: An emerging model to elucidate the molecular basis of interspecific differences in transposable element activity. Mobile Genetic Elements 2:142-144 (2012). [[media:deMeaux-MES-2012.pdf| PDF]]
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*Alcázar R, Pecinka A, Aarts MGM, Fransz PF, Koornneef M. Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Curr Opin Plant Biol 15:205-211 (2012). [http://www.sciencedirect.com/science/article/pii/S1369526612000039 abstract]
*Alcázar R, Pecinka A, Aarts MGM, Fransz PF, Koornneef M. Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Curr Opin Plant Biol 15:205-211 (2012). [http://www.sciencedirect.com/science/article/pii/S1369526612000039 abstract]
 +
'''2011'''
*Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O. Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biology 9:24 (2011). [[media:Pecinka-BMCPB-2011.pdf| PDF]]
*Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O. Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biology 9:24 (2011). [[media:Pecinka-BMCPB-2011.pdf| PDF]]
 +
'''2010'''
*Pecinka, A., Dinh, H.Q., Rosa, M., Baubec, T., Lettner, N. and Mittelsten Scheid, O. Epigenetic control of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell 22:1-12 (2010). [[media:Pecinka-Plant_cell.pdf| PDF]]
*Pecinka, A., Dinh, H.Q., Rosa, M., Baubec, T., Lettner, N. and Mittelsten Scheid, O. Epigenetic control of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell 22:1-12 (2010). [[media:Pecinka-Plant_cell.pdf| PDF]]
*Baubec, T., Dinh, H.Q., Pecinka, A., Rakic, B., Rozhon, W., Wohlrab, B., von Haeseler, A. and Mittelsten Scheid, O. Cooperation of Multiple Chromatin Modifications Can Generate Unanticipated Stability of Epigenetic States in Arabidopsis. Plant Cell 22: 34-47 (2010). [[media:Baubec et al-TPC-2010-supplement.pdf| PDF]]
*Baubec, T., Dinh, H.Q., Pecinka, A., Rakic, B., Rozhon, W., Wohlrab, B., von Haeseler, A. and Mittelsten Scheid, O. Cooperation of Multiple Chromatin Modifications Can Generate Unanticipated Stability of Epigenetic States in Arabidopsis. Plant Cell 22: 34-47 (2010). [[media:Baubec et al-TPC-2010-supplement.pdf| PDF]]
 +
'''2009'''
*Pecinka, A., Rosa, M., Schikora, A., Berlinger, M., Hirt, H., Luschnig, C. and Mittelsten Scheid, O. Transgenerational stress memory is not a general response in Arabidopsis. PLoS One 4:e5202 (2009). [[media:Pecinka et al-PLoSOne-2009.pdf| PDF]]
*Pecinka, A., Rosa, M., Schikora, A., Berlinger, M., Hirt, H., Luschnig, C. and Mittelsten Scheid, O. Transgenerational stress memory is not a general response in Arabidopsis. PLoS One 4:e5202 (2009). [[media:Pecinka et al-PLoSOne-2009.pdf| PDF]]
*Baubec, T., Pecinka, A., Rozhon, W. and Mittelsten Scheid, O. Effective, homogeneous and transient interference with cytosine methylation in plant genomic DNA by zebularine. Plant Journal 57:542-554 (2009). [[media:Baubec et al-TPJ-2009.pdf| PDF]]
*Baubec, T., Pecinka, A., Rozhon, W. and Mittelsten Scheid, O. Effective, homogeneous and transient interference with cytosine methylation in plant genomic DNA by zebularine. Plant Journal 57:542-554 (2009). [[media:Baubec et al-TPJ-2009.pdf| PDF]]
 +
'''2008'''
*Jovtchev, G., Watanabe, K., Pecinka, A., Rosin, F.M., Mette, M.F., Lam, E. and Schubert, I. Size and number of tandem repeat arrays can determine somatic homologous pairing of transgene loci mediated by epigenetic modifications in Arabidopsis thaliana nuclei. Chromosoma 117:267-276 (2008). [[media:Jovtchev-2008.pdf| PDF]]
*Jovtchev, G., Watanabe, K., Pecinka, A., Rosin, F.M., Mette, M.F., Lam, E. and Schubert, I. Size and number of tandem repeat arrays can determine somatic homologous pairing of transgene loci mediated by epigenetic modifications in Arabidopsis thaliana nuclei. Chromosoma 117:267-276 (2008). [[media:Jovtchev-2008.pdf| PDF]]
*Fischer, U., Kuhlmann, M., Pecinka, A., Schmidt, R. and Mette, M.F. Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation. Plant Journal 53:1-10 (2008). [[media:Fischer-TPJ-2008.pdf| PDF]]
*Fischer, U., Kuhlmann, M., Pecinka, A., Schmidt, R. and Mette, M.F. Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation. Plant Journal 53:1-10 (2008). [[media:Fischer-TPJ-2008.pdf| PDF]]
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'''2007'''
*Baroux, C., Pecinka, A., Fuchs, J., Schubert, I. and Grossniklaus, U. The triploid endosperm genome of Arabidopsis adopts a peculiar, parental-dosage-dependent chromatin organization. Plant Cell 19:1782-1794 (2007). [[media:Baroux-TPC-2007.pdf| PDF]]
*Baroux, C., Pecinka, A., Fuchs, J., Schubert, I. and Grossniklaus, U. The triploid endosperm genome of Arabidopsis adopts a peculiar, parental-dosage-dependent chromatin organization. Plant Cell 19:1782-1794 (2007). [[media:Baroux-TPC-2007.pdf| PDF]]
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'''2006'''
*Berr, A., Pecinka, A., Meister, A., Kreth, G., Fuchs, J., Blattner, F.R., Lysak, M.A. and Schubert, I. Chromosome arrangement and nuclear architecture but not centromeric sequences are conserved between Arabidopsis thaliana and Arabidopsis lyrata. Plant Journal 48:771-783 (2006). [[media:Berr-TPJ-2006.pdf| PDF]]
*Berr, A., Pecinka, A., Meister, A., Kreth, G., Fuchs, J., Blattner, F.R., Lysak, M.A. and Schubert, I. Chromosome arrangement and nuclear architecture but not centromeric sequences are conserved between Arabidopsis thaliana and Arabidopsis lyrata. Plant Journal 48:771-783 (2006). [[media:Berr-TPJ-2006.pdf| PDF]]
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*Schubert, V., Klatte, M., Pecinka, A., Meister, A., Jasencakova, Z., Schubert, I. Sister chromatids are often incompletely cohesed in meristematic and endopolyploid interphase nuclei of Arabidopsis thaliana. Genetics 172:467-475 (2006). [[media:Schuberv-2006.pdf| PDF]]
*Schubert, V., Klatte, M., Pecinka, A., Meister, A., Jasencakova, Z., Schubert, I. Sister chromatids are often incompletely cohesed in meristematic and endopolyploid interphase nuclei of Arabidopsis thaliana. Genetics 172:467-475 (2006). [[media:Schuberv-2006.pdf| PDF]]
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'''2005'''
*Watanabe, K., Pecinka, A., Meister, A., Schubert, I. and Lam, E. DNA hypomethylation reduces homologous pairing of inserted tandem repeat arrays in somatic nuclei of Arabidopsis thaliana. Plant Journal 44:531-540 (2005). [[media:Watanabe-2005.pdf| PDF]]
*Watanabe, K., Pecinka, A., Meister, A., Schubert, I. and Lam, E. DNA hypomethylation reduces homologous pairing of inserted tandem repeat arrays in somatic nuclei of Arabidopsis thaliana. Plant Journal 44:531-540 (2005). [[media:Watanabe-2005.pdf| PDF]]
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*Lysak, M.A., Koch, M., Pecinka, A. and Schubert, I. Chromosome triplication found across the tribe Brassiceae. Genome Research 15:516-525 (2005). [[media:Lysak-GR-2005.pdf| PDF]]
*Lysak, M.A., Koch, M., Pecinka, A. and Schubert, I. Chromosome triplication found across the tribe Brassiceae. Genome Research 15:516-525 (2005). [[media:Lysak-GR-2005.pdf| PDF]]
 +
'''2004'''
*Pecinka, A., Schubert, V., Meister, A., Kreth, G., Klatte, M., Lysak, M.A., Fuchs, J. and Schubert, I. Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes. Chromosoma 113:258-269 (2004). [[media:Pecinka-Chromosoma-2004.pdf| PDF]]
*Pecinka, A., Schubert, V., Meister, A., Kreth, G., Klatte, M., Lysak, M.A., Fuchs, J. and Schubert, I. Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes. Chromosoma 113:258-269 (2004). [[media:Pecinka-Chromosoma-2004.pdf| PDF]]
*Schubert, I., Pecinka, A., Meister, A., Schubert, V., Klatte, M. and Jovtchev, G. DNA damage processing and aberration formation in plants. Cytogenetic Genome Research 104:104-108 (2004). [[media:Schubert-CGR-2004.pdf| PDF]]
*Schubert, I., Pecinka, A., Meister, A., Schubert, V., Klatte, M. and Jovtchev, G. DNA damage processing and aberration formation in plants. Cytogenetic Genome Research 104:104-108 (2004). [[media:Schubert-CGR-2004.pdf| PDF]]
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'''2003'''
*Lysak, M.A., Pecinka, A. and Schubert, I. Recent progress in chromosome painting of Arabidopsis and related species. Chromosome Research 11:195-20 (2003). [[media:Lysak-ChrRes-2003.pdf| PDF]]
*Lysak, M.A., Pecinka, A. and Schubert, I. Recent progress in chromosome painting of Arabidopsis and related species. Chromosome Research 11:195-20 (2003). [[media:Lysak-ChrRes-2003.pdf| PDF]]

Current revision

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Publications

2014

  • Pecinka A, Liu C.-H. Drugs for Plant Chromosome and Chromatin Research. Cytogenetic Genome Research DOI: 10.1159/000360774 (2014). Full text
  • Baubec T, Finke A, Mittelsten Scheid O, Pecinka A. Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis. EMBO Reports doi: 10.1002/embr.201337915 (2014). Full text

2013

  • Pecinka A, Abdelsamad A, Vu GTH. Hidden genetic nature of epigenetic natural variation in plants. Trends in Plant Science 18:625-632 (2013) Full text

2012

  • de Meaux J, Pecinka A. The Arabidopsis genus: An emerging model to elucidate the molecular basis of interspecific differences in transposable element activity. Mobile Genetic Elements 2:142-144 (2012). PDF
  • Pecinka A, Mittelsten Scheid O. Stress-induced chromatin changes: A critical view on their heritability. Plant Cell Physiology doi: 10.1093/pcp/pcs044 (2012). PDF
  • Alcázar R, Pecinka A, Aarts MGM, Fransz PF, Koornneef M. Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Curr Opin Plant Biol 15:205-211 (2012). abstract

2011

  • Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O. Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biology 9:24 (2011). PDF

2010

  • Pecinka, A., Dinh, H.Q., Rosa, M., Baubec, T., Lettner, N. and Mittelsten Scheid, O. Epigenetic control of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell 22:1-12 (2010). PDF
  • Baubec, T., Dinh, H.Q., Pecinka, A., Rakic, B., Rozhon, W., Wohlrab, B., von Haeseler, A. and Mittelsten Scheid, O. Cooperation of Multiple Chromatin Modifications Can Generate Unanticipated Stability of Epigenetic States in Arabidopsis. Plant Cell 22: 34-47 (2010). PDF

2009

  • Pecinka, A., Rosa, M., Schikora, A., Berlinger, M., Hirt, H., Luschnig, C. and Mittelsten Scheid, O. Transgenerational stress memory is not a general response in Arabidopsis. PLoS One 4:e5202 (2009). PDF
  • Baubec, T., Pecinka, A., Rozhon, W. and Mittelsten Scheid, O. Effective, homogeneous and transient interference with cytosine methylation in plant genomic DNA by zebularine. Plant Journal 57:542-554 (2009). PDF

2008

  • Jovtchev, G., Watanabe, K., Pecinka, A., Rosin, F.M., Mette, M.F., Lam, E. and Schubert, I. Size and number of tandem repeat arrays can determine somatic homologous pairing of transgene loci mediated by epigenetic modifications in Arabidopsis thaliana nuclei. Chromosoma 117:267-276 (2008). PDF
  • Fischer, U., Kuhlmann, M., Pecinka, A., Schmidt, R. and Mette, M.F. Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation. Plant Journal 53:1-10 (2008). PDF

2007

  • Baroux, C., Pecinka, A., Fuchs, J., Schubert, I. and Grossniklaus, U. The triploid endosperm genome of Arabidopsis adopts a peculiar, parental-dosage-dependent chromatin organization. Plant Cell 19:1782-1794 (2007). PDF

2006

  • Berr, A., Pecinka, A., Meister, A., Kreth, G., Fuchs, J., Blattner, F.R., Lysak, M.A. and Schubert, I. Chromosome arrangement and nuclear architecture but not centromeric sequences are conserved between Arabidopsis thaliana and Arabidopsis lyrata. Plant Journal 48:771-783 (2006). PDF
  • Kirik, A., Pecinka, A., Wendeler, E. and Reiss, B. The chromatin assembly factor subunit FASCIATA1 is involved in homologous recombination in plants. Plant Cell 18:2431-2442 (2006). PDF
  • Pecinka, A., Suchankova, P., Lysak, M.A., Travnicek, B. and Dolezel, J. Nuclear DNA content variation among Central European Koeleria taxa. Annals of Botany 98:117-122 (2006). PDF
  • Lysak, M.A., Berr, A., Pecinka, A., Schmidt, R., McBreen, K. and Schubert, I. Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species. Proceedings of the National Academy of Sciences USA 103:5224-5229 (2006). PDF
  • Schubert, V., Klatte, M., Pecinka, A., Meister, A., Jasencakova, Z., Schubert, I. Sister chromatids are often incompletely cohesed in meristematic and endopolyploid interphase nuclei of Arabidopsis thaliana. Genetics 172:467-475 (2006). PDF

2005

  • Watanabe, K., Pecinka, A., Meister, A., Schubert, I. and Lam, E. DNA hypomethylation reduces homologous pairing of inserted tandem repeat arrays in somatic nuclei of Arabidopsis thaliana. Plant Journal 44:531-540 (2005). PDF
  • Pecinka, A., Kato, N., Meister, A., Probst, A.V., Schubert, I. and Lam, E. Tandem repetitive transgenes and fluorescent chromatin tags alter the local interphase chromosome arrangement in Arabidopsis thaliana. Journal of Cell Science 118:3751-3758 (2005). PDF
  • Lysak, M.A., Koch, M., Pecinka, A. and Schubert, I. Chromosome triplication found across the tribe Brassiceae. Genome Research 15:516-525 (2005). PDF

2004

  • Pecinka, A., Schubert, V., Meister, A., Kreth, G., Klatte, M., Lysak, M.A., Fuchs, J. and Schubert, I. Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes. Chromosoma 113:258-269 (2004). PDF
  • Schubert, I., Pecinka, A., Meister, A., Schubert, V., Klatte, M. and Jovtchev, G. DNA damage processing and aberration formation in plants. Cytogenetic Genome Research 104:104-108 (2004). PDF

2003

  • Lysak, M.A., Pecinka, A. and Schubert, I. Recent progress in chromosome painting of Arabidopsis and related species. Chromosome Research 11:195-20 (2003). PDF
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