Pecinka lab: Difference between revisions
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Our goal is to understand molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence | Our goal is to understand molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence and chromatin changes are generated by endo- and exogenous factors and how these forces are balanced by the genome repair and epigenetic mechanisms. To this end we use mainly the model plant ''Arabidopsis thaliana'' and several other ''Brassicaceae'' and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods. | ||
[[Pecinka_lab:Research | read more...]] | [[Pecinka_lab:Research | read more...]] | ||
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<h3><font style="color:#4169E1;">Lab Members</font></h3> | <h3><font style="color:#4169E1;">Lab Members</font></h3> | ||
*[[Pecinka_lab: | *[[Pecinka_lab:Heinrich Bente|Heinrich Bente]] | ||
*[[Pecinka_lab:Mariana_Diaz|Mariana Andrea Diaz Smoje]] | *[[Pecinka_lab:Mariana_Diaz|Mariana Andrea Diaz Smoje]] | ||
*[[Pecinka_lab:Andreas_Finke|Andreas Finke]] | *[[Pecinka_lab:Andreas_Finke|Andreas Finke]] | ||
*[[Pecinka_lab:Chun Hsin Liu|Chun Hsin Liu (Phoebe)]] | *[[Pecinka_lab:Chun Hsin Liu|Chun Hsin Liu (Phoebe)]] | ||
*[[Pecinka_lab:Catarine Markus|Catarine Markus]] | |||
*[[Pecinka_lab:Ales_Pecinka|Ales Pecinka]] | *[[Pecinka_lab:Ales_Pecinka|Ales Pecinka]] | ||
*[[Pecinka_lab:Bjoern_Pietzenuk|Björn Pietzenuk]] | *[[Pecinka_lab:Bjoern_Pietzenuk|Björn Pietzenuk]] | ||
<h3><font style="color:#4169E1;">Technitians</font></h3> | <h3><font style="color:#4169E1;">Technitians</font></h3> | ||
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<h3><font style="color:#FF8C00;">Recent Publications</font></h3> | <h3><font style="color:#FF8C00;">Recent Publications</font></h3> | ||
* | *Liu C-H, Finke A, Diaz M, Rozhon W, Poppenberger B, Baubec T, Pecinka A. (2015): Repair of DNA Damage Induced by the Cytidine Analog Zebularine Requires ATR and ATM in Arabidopsis. Plant Cell doi/10.1105/tpc.114.135467 [http://www.plantcell.org/content/early/2015/05/28/tpc.114.135467.full.pdf+html PDF]. | ||
* | *Baranauskė S, Mickutė M, Plotnikova A, Finke A, Venclovas Č, Klimašauskas S, Vilkaitis G. (2015): Functional mapping of the plant small RNA methyltransferase: HEN1 physically interacts with HYL1 and DICER-LIKE 1 proteins. Nucleic Acids Research 43:2802-2812 [http://nar.oxfordjournals.org/content/43/5/2802.long Full text] | ||
* | *Willing, Rawat et al. (2015): Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants 1:1-7 [http://www.nature.com/articles/nplants201423 Full text] | ||
* | *Piofczyk T, Jeena G, Pecinka A. (2015): Arabidopsis thaliana natural variation reveals connections between UV radiation stress and plant pathogen-like defense responses. Plant Physiology Biochemistry DOI: 10.1016/j.plaphy.2015.01.011 (2015) [http://www.sciencedirect.com/science/article/pii/S0981942815000212 Full text] | ||
*[[Pecinka_lab:Publications|see complete list...]] | *[[Pecinka_lab:Publications|see complete list...]] | ||
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<h3><font style="color:red">News</font></h3> | <h3><font style="color:red">News</font></h3> | ||
* | *2015-06-18: Phoebe defended her PhD work at University of Cologne. Amazing! | ||
* | *2015-06: Thomas leaving the lab after 4.5 years, Henrich starting his masters and Catarine joining the group for one year of her PhD. | ||
* | *2015-06-15: Ahmed successfully defended his PhD work at University of Göttingen. Congratulations! | ||
* | *2015-06: Not only DNA demethylation - cytidine analog zebularine triggers DNA damage response in Arabidopsis. Read more in our recent Plant Cell paper [http://www.plantcell.org/content/early/2015/05/28/tpc.114.135467.full.pdf+html PDF] | ||
*2015-05: Andreas co-authored on the paper showing physical interaction between specific miRNA components. Congratulations! [http://nar.oxfordjournals.org/content/43/5/2802 Full text] | |||
Revision as of 12:45, 18 June 2015
Centre of Plant Structural and Functional Genomics |
ResearchThe Pecinka lab is hosted by the Department of Plant Breeding and Genetics at the Max Planck Institute for Plant Breeding Research in Cologne, Germany.
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Lab Members
Technitians
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