Pecinka lab

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(47 intermediate revisions not shown.)
Line 1: Line 1:
{{Template:Pecinka Lab}}
{{Template:Pecinka Lab}}
-
{| cellspacing="2px" cellpadding="0" border="0" style="padding: 0px; width: 700px; color: #000000; background-color: #ffffff;"
+
{| {| class="wikitable" width="100%" cellspacing="2px" cellpadding="0" border="0" style="padding:10px;color:#000000;background-color:#ffffff;"
|-valign="top"
|-valign="top"
-
|width=450px style="padding: 5px; background-color: #ffffff; border: 2px solid #F8B603;" |
+
|style="padding: 5px;">; background-color: #ffffff; border: 2px solid #9ACD32;" |
 +
<h3><font style="color:#31B404;">Research</font></h3>
 +
The goal of the Pecinka lab is to understand molecular mechanisms shaping plant genomes. To this end we use the model plant ''Arabidopsis thaliana'' and several other ''Brassicaceae'' and analyze them by using forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.
-
<h3><font style="color:#F8B603;">Research</font></h3>
+
Pecinka lab is hosted by the [http://www.mpipz.mpg.de/10574/koornneef-dpt Department of Plant Breeding and Genetics] at the [http://www.mpipz.mpg.de/2169/en Max Planck Institute for Plant Breeding Research] in Cologne, Germany.
-
The goal of Pecinka lab is to understand molecular basis of mechanisms shaping plant genomes. We focus in particular on DNA repair and inactivation of repetitive DNA that both have potential to cause large genomic chages. To this end we use model species Arabidopsis thaliana and several other Brassicaceae and analyze them using forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.
+
Our wiki site was developed under [http://openwetware.org/wiki/Main_Page OpenWetWare], an open access effort to promote sharing of information among biologists.
-
Pecinka lab is hosted by the Department of Plant Breeding and Genetics at the Max Planck Institute for Plant Breeding Research in Cologne, Germany.
+
[[Pecinka_lab:Research | read more...]]
-
Our wiki site is developed under Openwetware, an open access effort to promote the sharing of information among researchers working in biology.
+
|rowspan=2 width=200px style="padding: 5px; background-color: #ffffff; border: 0px solid #4169E1;" |
-
[[Pecinka_Lab:Research | read more...]]
+
-
|width=135px style="padding: 5px; background-color: #ffffff; border: 2px solid #4169E1;" |
+
<h3><font style="color:#4169E1;">Lab Members</font></h3>
<h3><font style="color:#4169E1;">Lab Members</font></h3>
-
*[[Pecinka_Lab:Ahmed_Abdelsamad|Ahmed Abdelsamad]]
+
*[[Pecinka_lab:Ahmed_Abdelsamad|Ahmed Abdelsamad]]
-
*[[Pecinka_Lab:Chun Hsin Liu|Chun Hsin Liu (Phoebe)]]
+
*[[Pecinka_lab:Chun Hsin Liu|Chun Hsin Liu (Phoebe)]]
-
*[[Pecinka_Lab:Ales_Pecinka|Ales Pecinka]]
+
*[[Pecinka_lab:Ales_Pecinka|Ales Pecinka]]
-
*[[Pecinka_Lab:Björn_Pietzenuk|Björn Pietzenuk]]
+
*[[Pecinka_lab:Bjoern_Pietzenuk|Björn Pietzenuk]]
-
*[[Pecinka_Lab:Thomas_Piofczyk|Thomas Piofczyk]]
+
*[[Pecinka_lab:Thomas_Piofczyk|Thomas Piofczyk]]
-
*[[Pecinka_Lab:Giang Vu|Giang Vu]]
+
-
<h3><font style="color:#4169E1;">Visiting Students</font></h3>
+
<h3><font style="color:#4169E1;">Guest Scientists</font></h3>
-
*[[Pecinka_Lab:Pawel_Mikulski|Pawel Mikulski]]
+
*[[Pecinka_lab:Nawratan_Bagwan|Navratan Bagwan]]
-
*[[Pecinka_Lab:Miriam_Schleinitz|Miriam Schleinitz]]
+
*[[Pecinka_lab:Sabine_Le_Gall|Sabine Le Gall]]
<h3><font style="color:#4169E1;">Technitians</font></h3>
<h3><font style="color:#4169E1;">Technitians</font></h3>
-
*[[Pecinka_Lab:Barbara_Eilts|Barbara_Eilts]]
+
*[[Pecinka_lab:Barbara_Eilts|Barbara Eilts]]
-
*[[Pecinka_Lab:Petra_Pecinkova|Petra Pecinkova]]
+
*[[Pecinka_lab:Petra_Pecinkova|Petra Pecinkova]]
-
<h3><font style="color:#4169E1;">Alumni</font></h3>
 
-
*[[Pecinka_Lab:Alexander Schott|Alexander Schott]]
 
-
*[[Pecinka_Lab:Anastasia Hoffmann|Anastasia Hoffmann]]
 
-
[[Pecinka_Lab:Alumni|See all former members...]]
 
-
|}
 
-
{| cellspacing="2px" cellpadding="0" border="0" style="padding: 0px; width: 700px; color: #000000; background-color: #ffffff;"
 
-
|-valign="top"
 
-
|width=300px rowspan=3 style="padding: 5px; background-color: #ffffff; border: 2px solid #4169E1;" |
 
-
<h3><font style="color:#C9D3EB;">Recent Publications</font></h3>
+
[[Pecinka_lab:People|see complete list...]]
-
*Pecinka A, Mittelsten Scheid O (2012): Stress-induced chromatin changes: A critical view on their heritability. Plant Cell Physiology doi: 10.1093/pcp/pcs044. [http://pcp.oxfordjournals.org/content/early/2012/03/28/pcp.pcs044.abstract]
 
-
*Alcázar R, Pecinka A, Aarts MGM, Fransz PF, Koornneef M (2012): Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Curr Opin Plant Biol 15:205-211. [http://www.sciencedirect.com/science/article/pii/S1369526612000039]
 
-
*Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O (2011): Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biology 9:24. [http://www.biomedcentral.com/1741-7007/9/24]
 
-
*Pecinka A, Dinh HQ, Rosa M, Baubec T, Lettner N, Mittelsten Scheid O (2010): Epigenetic control of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell 22: 3118–3129. [http://www.plantcell.org/content/22/9/3118.full]
 
-
*Pecinka A, Rosa M, Schikora A, Berlinger M, Hirt H, Luschnig C, Mittelsten Scheid O (2009): Transgenerational stress memory is not a general response in Arabidopsis. PLoS One 4:e5202. [http://www.plosone.org/article/info:doi/10.1371/journal.pone.0005202]
 
-
*[[Pecinka_Lab:Publications | see complete list...]]
 
-
|width=200px style="padding: 5px; background-color: #ffffff; border: 2px solid #F8B603;" |
+
[http://www4.clustrmaps.com/user/efef92c9 http://www4.clustrmaps.com/stats/maps-no_clusters/openwetware.org-wiki-Pecinka_Lab-thumb.jpg]
-
<h3><font style="color:#F8B603;">Announcements</font></h3>
+
|-
-
*[[Pecinka_Lab:Group_meeting|Group meeting, journal clubs, and seminars]]
+
|
 +
{| cellspacing="2px" cellpadding="0" border="0" style="padding: 0px; width: 800px; color: #000000; background-color: #ffffff;"
|-valign="top"
|-valign="top"
-
|style="padding: 5px; background-color: #ffffff; border: 2px solid red;" |
+
|width=530px rowspan=3 style="padding: 5px; background-color: #ffffff; border: 0px solid #FF8C00;" |
 +
 
 +
<h3><font style="color:#FF8C00;">Recent Publications</font></h3>
 +
 
 +
*de Meaux J, Pecinka A. The Arabidopsis genus: An emerging model to elucidate the molecular basis of interspecific differences in transposable element activity. Mobile Genetic Elements 2:142-144 (2012). [[media:deMeaux-MES-2012.pdf| PDF]]
 +
*Pecinka A, Mittelsten Scheid O. Stress-induced chromatin changes: A critical view on their heritability. Plant Cell Physiology doi: 10.1093/pcp/pcs044 (2012). [[media:Pecinka-PCP-2012.pdf| PDF]]
 +
*Alcázar R, Pecinka A, Aarts MGM, Fransz PF, Koornneef M. Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Curr Opin Plant Biol 15:205-211 (2012). [http://www.sciencedirect.com/science/article/pii/S1369526612000039 abstract]
 +
*Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O. Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biology 9:24 (2011). [[media:Pecinka-BMCPB-2011.pdf| PDF]]
 +
 
 +
*[[Pecinka_lab:Publications|see complete list...]]
 +
 
 +
|width=300px style="padding: 5px; background-color: #ffffff; border: 0px solid #F8B603;" |
<h3><font style="color:red">News</font></h3>
<h3><font style="color:red">News</font></h3>
-
*[http://www.nsf.gov/funding/pgm_summ.jsp?pims_id=5338&org=BIO NSF Plant Genome Research Program]
+
*2013-02-05: Next-generation sequencing grant from the Max Planck Society approved for funding.
-
**[http://www-plb.ucdavis.edu/Labs/sinha/TomatoGenome/ GEPR: Elucidating gene networks regulating development in tomato]
+
*2013-02-05 - 07: Pecinka lab organizes COST Action UV4Growth school "Molecular toolkit for applied UV-B research"
-
**[[Maloof_Lab:PGRP | Molecular evolutionary genetics of crop and weed responses to
+
*2012-11-27: [[media: Post-doc-Pecinka_lab.pdf| Post-doc position in the "Analysis of two Australian crucifers as models for comparative -omics" is available in the Pecinka lab.]]
-
crowding]] (2002-2008)
+
 
-
*[http://www.hfsp.org/ Human Frontier Science Program] (2004-2008)
+
|}
-
|-align="center"
+
-
|style="padding: 10px; background-color: #ffffff;" |
+
-
[http://www4.clustrmaps.com/user/60a714c2 http://www4.clustrmaps.com/stats/maps-no_clusters/malooflab.openwetware.org--thumb.jpg]
+
|}
|}
__NOTOC__
__NOTOC__

Revision as of 17:07, 5 February 2013

Image:LablogoAP2.tif


Home      Research      People      Publications      Protocols      Resources      Seminars      Positions      Lab life     


Research

The goal of the Pecinka lab is to understand molecular mechanisms shaping plant genomes. To this end we use the model plant Arabidopsis thaliana and several other Brassicaceae and analyze them by using forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.

Pecinka lab is hosted by the Department of Plant Breeding and Genetics at the Max Planck Institute for Plant Breeding Research in Cologne, Germany.

Our wiki site was developed under OpenWetWare, an open access effort to promote sharing of information among biologists.

read more...

Lab Members

Guest Scientists

Technitians


see complete list...


openwetware.org-wiki-Pecinka_Lab-thumb.jpg

Recent Publications

  • de Meaux J, Pecinka A. The Arabidopsis genus: An emerging model to elucidate the molecular basis of interspecific differences in transposable element activity. Mobile Genetic Elements 2:142-144 (2012). PDF
  • Pecinka A, Mittelsten Scheid O. Stress-induced chromatin changes: A critical view on their heritability. Plant Cell Physiology doi: 10.1093/pcp/pcs044 (2012). PDF
  • Alcázar R, Pecinka A, Aarts MGM, Fransz PF, Koornneef M. Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Curr Opin Plant Biol 15:205-211 (2012). abstract
  • Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O. Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biology 9:24 (2011). PDF

News

Personal tools