Pecinka lab

Centre of Plant Structural and Functional Genomics Institute of Experimental Botany of the Czech Academy of Sciences, v. v. i. Šlechtitelů 31 Olomouc, CZ-783 71 Czech Republic Contact

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Research The Pecinka lab is hosted by the Department of Plant Breeding and Genetics at the Max Planck Institute for Plant Breeding Research in Cologne, Germany. Our goal is to understand molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence and chromatin changes are generated by endo- and exogenous factors and how these forces are balanced by the genome repair and epigenetic mechanisms. To this end we use mainly the model plant Arabidopsis thaliana and several other Brassicaceae and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods. read more...

Lab Members Ales Pecinka Mariana Andrea Diaz Smoje Andreas Finke Kashif Nawaz Fen Yang Technitians Barbara Eilts Petra Pecinkova see complete list...

Recent Publications Pietzenuk B., Markus C., Gaubert H., Bagwan N., Merotto A., Bucher E., Pecinka A. (2016): Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements. Genome Biology 17:209 DOI: 10.1186/s13059-016-1072-3 Open access Baroux C., Pecinka A., Fuchs J., Kreth G., Schubert I., Grossniklaus I. (2016): Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma doi:10.1007/s00412-016-0578-5 Open access Vu G.T.H., Schmutzer T., Bull F., Cao H.X., Fuchs J., Tran T.D., Jovtchev G., Pistrick K., Stein N., Pecinka A., Neumann P., Novak P., Macas J., Deard P.H., Blattner F.R., Scholz U., Schubert I (2015): Comparative Genome Analysis Reveals Divergent Genome Size Evolution in a Carnivorous Plant Genus. Plant Genome doi:10.3835/plantgenome2015.04.0021 Open access Rawat V., Abdelsamad A., Pietzenuk B., Seymour D.K., Koenig D., Weigel D., Pecinka A., Schneeberger K. (2015): Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data. PLoS One 10(9):e0137391. Open access see complete list... News 2016-10-11: Transposons and heat stress. Read about evolution of heat responsiveness in ONSEN and other TEs groups in our latest paper Open access 2016-09-15: Fen Yang joins the lab as new PhD student. Welcome in Cologne! 2016-08-30: Priscilla successfully defended her B.Sc. work. Congratulations! 2016-07-27: Anna is going back to her home lab in Poland. We miss her already! 2016-07-07: Plant Genome Stability and Change Meeting in Japan started. 2016-06-27: Catarine is returning back to her home lab in Brazil after one year in Cologne. We will miss you! 2016-06-25: Catarine won a prize for her talk on IWSC in Prague! Big congratulations.