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<h3><font style="color:#31B404;">Research</font></h3>
<h3><font style="color:#31B404;">Research</font></h3>


The Pecinka lab is hosted by the [http://www.mpipz.mpg.de/10574/koornneef-dpt Department of Plant Breeding and Genetics] at the [http://www.mpipz.mpg.de/2169/en Max Planck Institute for Plant Breeding Research] in Cologne, Germany.
Pecinka group is hosted by the [http://olomouc.ueb.cas.cz/ Centre of Plant Structural and Functional Genomics], which is part of [http://www.ueb.cas.cz/cs Institute of Experimental Botany of the Czech Academy of Sciences, v. v. i.] in Olomouc, Czech Republic.


 
Our goal is understanding molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence and chromatin changes are generated by endo- and exogenous factors and how these forces are balanced by the genome repair and epigenetic mechanisms. For our research we use mainly ''Arabidopsis thaliana'' and barley and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.
Our goal is to understand molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence variation is generated by various mutagenic factors and how these forces are counteracted by the genome repair and maintenance mechanisms. To this end we use the model plant ''Arabidopsis thaliana'' and several other ''Brassicaceae'' and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.
[[Pecinka_lab:Research | read more...]]
[[Pecinka_lab:Research | read more...]]
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<h3><font style="color:#4169E1;">Lab Members</font></h3>
<h3><font style="color:#4169E1;">Lab Members</font></h3>
*[[Pecinka_lab:Ahmed_Abdelsamad|Ahmed Abdelsamad]]
*[[Pecinka_lab:Mariana_Diaz|Mariana Andrea Diaz Smoje]]
*[[Pecinka_lab:Andreas_Finke|Andreas Finke]]
*[[Pecinka_lab:Chun Hsin Liu|Chun Hsin Liu (Phoebe)]]
*[[Pecinka_lab:Ales_Pecinka|Ales Pecinka]]
*[[Pecinka_lab:Ales_Pecinka|Ales Pecinka]]
*[[Pecinka_lab:Bjoern_Pietzenuk|Björn Pietzenuk]]
*[[Pecinka_lab:Thomas_Piofczyk|Thomas Piofczyk]]


<h3><font style="color:#4169E1;">Technitians</font></h3>
*[[Pecinka_lab:Hana Jerabkova|Hana Jeřábková]]
*[[Pecinka_lab:Barbara_Eilts|Barbara Eilts]]
*[[Pecinka_lab:Kashif Nawaz|Kashif Nawaz]]
*[[Pecinka_lab:Petra_Pecinkova|Petra Pecinkova]]
*[[Pecinka_lab:Anna Nowicka|Anna Nowicka]]
*[[Pecinka_lab:Beata Petrovska|Beáta Petrovská]]
*[[Pecinka_lab:Barbara_Piwowarczyk|Barbara Piwowarczyk]]
*[[Pecinka_lab:Pranav_Sahu|Pranav Sahu]]
*[[Pecinka_lab:Fen_Yang|Fen Yang]]


<h3><font style="color:#4169E1;">Visiting scientists</font></h3>
*[[Pecinka_lab:Marlene_Elsässer|Marlene Elsässer]]
*[[Pecinka_lab:Heinrich_Bente|Heinrich Bente]]


[[Pecinka_lab:People|see complete list...]]
[[Pecinka_lab:People|see complete list...]]
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<h3><font style="color:#FF8C00;">Recent Publications</font></h3>  
<h3><font style="color:#FF8C00;">Recent Publications</font></h3>  
*Diaz, M., Pecinka, A. (2018): Scaffolding for Repair: Understanding Molecular Functions of the SMC5/6 Complex. Genes 9:E36. doi: 10.3390/genes9010036. [http://www.mdpi.com/2073-4425/9/1/36 Open access]
*Diaz, M., Pecinka, A. (2017): Seeds as emerging hotspot for maintenance of genome stability. Cytologia 82:467-470.
*van Esse G.W., Walla A., Finke A., Koornneef M., Pecinka A., von Korff M. (2017): Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174:2397-2408. doi: 10.1104/pp.17.00108. [http://www.plantphysiol.org/content/174/4/2397 Full text]
*Baroux C., Pecinka A., Fuchs J., Kreth G., Schubert I., Grossniklaus I (2017): Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma 126:115-124 [http://link.springer.com/article/10.1007%2Fs00412-016-0578-5 Open access]


*Abdelsamad A, Pecinka A. Pollen-Specific Activation of Arabidopsis Retrogenes Is Associated with Global Transcriptional Reprogramming. Plant Cell DOI: http:/​/​dx.​doi.​org/​10.​1105/​tpc.​114.​126011 (2014). [http://www.plantcell.org/content/early/2014/08/12/tpc.114.126011.full.pdf+html Open access PDF]
*Pecinka A, Liu C.-H. Drugs for Plant Chromosome and Chromatin Research. Cytogenetic Genome Research DOI: 10.1159/000360774 (2014). [http://www.karger.com/Article/FullText/360774 Full text]
*Baubec T, Finke A, Mittelsten Scheid O, Pecinka A. Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis. EMBO Reports doi: 10.1002/embr.201337915 (2014). [http://embor.embopress.org/content/early/2014/02/20/embr.201337915 Full text]
*Pecinka A, Abdelsamad Ahmed, Vu GTH. Hidden genetic nature of epigenetic natural variation in plants. Trends in Plant Science 18:625-632 (2013) [http://www.sciencedirect.com/science/article/pii/S1360138513001453 Full text]




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<h3><font style="color:red">News</font></h3>
<h3><font style="color:red">News</font></h3>
*2014-08-12: RNA duplicated genes (retrogenes) are more frequent than expected in Arabidopsis and show transcriptional profile similar to animal retrogenes. Find more in our recent Plant Cell publication [http://www.plantcell.org/content/early/2014/08/12/tpc.114.126011.full.pdf+html Open access PDF]
*2014-04: Navratan was selected as a PhD student at Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain and Tom obtained post-doctoral fellowship at Institut de Recherche pour le Développement (IRD), Montpellier, France. Congratulations!
*2014-03-31: The manuscript "Drugs for Plant Chromosome and Chromatin Research" published in the special issue of Cytogenetic Genome Research [http://www.karger.com/Article/FullText/360774 Full text]


*2018-04-15: Two PhD positions in seed development in barley (read more [[media:Pecinka_PhD_seed.pdf| PDF]]) and in understanding chromosome and chromatin organization in Arabidopsis and barley (full information [[media:Pecinka_IEB_chromosomes.pdf| PDF]])! In case of your interest please send your application to Ales Pecinka (pecinka@ueb.cas.cz).
*2018-03-05: Barbara Piwowarzkyk from University of Krakow joins our group as visiting scientist.
*2018-02-01: Pranav moves from MPIPZ Cologne to IEB Olomouc. Second Marie Curie fellowship for the institute. Wellcome, Pranav.
*2018-01-12: SMC5/6 complex, more than just DNA damage repair. Read our review! [http://www.mdpi.com/2073-4425/9/1/36 Open access].


   
   


Latest revision as of 13:29, 15 April 2018


Home      Research      People      Publications      Protocols      Resources      Seminars      Positions      Lab life     


Research

Pecinka group is hosted by the Centre of Plant Structural and Functional Genomics, which is part of Institute of Experimental Botany of the Czech Academy of Sciences, v. v. i. in Olomouc, Czech Republic.

Our goal is understanding molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence and chromatin changes are generated by endo- and exogenous factors and how these forces are balanced by the genome repair and epigenetic mechanisms. For our research we use mainly Arabidopsis thaliana and barley and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods. read more...

Lab Members


see complete list...



Recent Publications

  • Diaz, M., Pecinka, A. (2018): Scaffolding for Repair: Understanding Molecular Functions of the SMC5/6 Complex. Genes 9:E36. doi: 10.3390/genes9010036. Open access
  • Diaz, M., Pecinka, A. (2017): Seeds as emerging hotspot for maintenance of genome stability. Cytologia 82:467-470.
  • van Esse G.W., Walla A., Finke A., Koornneef M., Pecinka A., von Korff M. (2017): Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174:2397-2408. doi: 10.1104/pp.17.00108. Full text
  • Baroux C., Pecinka A., Fuchs J., Kreth G., Schubert I., Grossniklaus I (2017): Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma 126:115-124 Open access

News

  • 2018-04-15: Two PhD positions in seed development in barley (read more PDF) and in understanding chromosome and chromatin organization in Arabidopsis and barley (full information PDF)! In case of your interest please send your application to Ales Pecinka (pecinka@ueb.cas.cz).
  • 2018-03-05: Barbara Piwowarzkyk from University of Krakow joins our group as visiting scientist.
  • 2018-02-01: Pranav moves from MPIPZ Cologne to IEB Olomouc. Second Marie Curie fellowship for the institute. Wellcome, Pranav.
  • 2018-01-12: SMC5/6 complex, more than just DNA damage repair. Read our review! Open access.



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