Pecinka lab: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
No edit summary
No edit summary
 
(119 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Template:Pecinka Lab}}
{{Template:Pecinka Lab}}
{| {| class="wikitable" width="100%" cellspacing="2px" cellpadding="0" border="0" style="padding:10px;color:#000000;background-color:#ffffff;"
{| {| class="wikitable" width="100%" cellspacing="2px" cellpadding="0" border="0" style="padding:20px;color:#000000;background-color:#ffffff;"
|-valign="top"
|-valign="top"
|style="padding: 5px;">; background-color: #ffffff; border: 2px solid #9ACD32;" |
|style="padding: 25px;">; background-color: #ffffff; border: 2px solid #9ACD32;" |
<h3><font style="color:#31B404;">Research</font></h3>
<h3><font style="color:#31B404;">Research</font></h3>
The goal of the Pecinka lab is to understand molecular mechanisms shaping plant genomes. To this end we use the model plant ''Arabidopsis thaliana'' and several other ''Brassicaceae'' and analyze them by using forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.


Pecinka lab is hosted by the [http://www.mpipz.mpg.de/10574/koornneef-dpt Department of Plant Breeding and Genetics] at the [http://www.mpipz.mpg.de/2169/en Max Planck Institute for Plant Breeding Research] in Cologne, Germany.
Pecinka group is hosted by the [http://olomouc.ueb.cas.cz/ Centre of Plant Structural and Functional Genomics], which is part of [http://www.ueb.cas.cz/cs Institute of Experimental Botany of the Czech Academy of Sciences, v. v. i.] in Olomouc, Czech Republic.
 
Our wiki site was developed under [http://openwetware.org/wiki/Main_Page OpenWetWare], an open access effort to promote sharing of information among biologists.


Our goal is understanding molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence and chromatin changes are generated by endo- and exogenous factors and how these forces are balanced by the genome repair and epigenetic mechanisms. For our research we use mainly ''Arabidopsis thaliana'' and barley and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods.
[[Pecinka_lab:Research | read more...]]
[[Pecinka_lab:Research | read more...]]
|rowspan=2 width=200px style="padding: 5px; background-color: #ffffff; border: 0px solid #4169E1;" |
|rowspan=2 width=200px style="padding: 5px; background-color: #ffffff; border: 0px solid #4169E1;" |


<h3><font style="color:#4169E1;">Lab Members</font></h3>
<h3><font style="color:#4169E1;">Lab Members</font></h3>
*[[Pecinka_lab:Ahmed_Abdelsamad|Ahmed Abdelsamad]]
*[[Pecinka_lab:Chun Hsin Liu|Chun Hsin Liu (Phoebe)]]
*[[Pecinka_lab:Ales_Pecinka|Ales Pecinka]]
*[[Pecinka_lab:Ales_Pecinka|Ales Pecinka]]
*[[Pecinka_lab:Bjoern_Pietzenuk|Björn Pietzenuk]]
*[[Pecinka_lab:Thomas_Piofczyk|Thomas Piofczyk]]


<h3><font style="color:#4169E1;">Guest Scientists</font></h3>
*[[Pecinka_lab:Hana Jerabkova|Hana Jeřábková]]
*[[Pecinka_lab:Navratan_Bagwan|Navratan Bagwan]]
*[[Pecinka_lab:Kashif Nawaz|Kashif Nawaz]]
*[[Pecinka_lab:Sabine_Le_Gall|Sabine Le Gall]]
*[[Pecinka_lab:Anna Nowicka|Anna Nowicka]]
*[[Pecinka_lab:Beata Petrovska|Beáta Petrovská]]
*[[Pecinka_lab:Barbara_Piwowarczyk|Barbara Piwowarczyk]]
*[[Pecinka_lab:Pranav_Sahu|Pranav Sahu]]
*[[Pecinka_lab:Fen_Yang|Fen Yang]]


<h3><font style="color:#4169E1;">Technitians</font></h3>
*[[Pecinka_lab:Barbara_Eilts|Barbara Eilts]]
*[[Pecinka_lab:Petra_Pecinkova|Petra Pecinkova]]


[[Pecinka_lab:People|see complete list...]]


[[Pecinka_lab:People|see complete list...]]






[http://www4.clustrmaps.com/user/efef92c9 http://www4.clustrmaps.com/stats/maps-no_clusters/openwetware.org-wiki-Pecinka_Lab-thumb.jpg]


|-
|-
Line 44: Line 36:


<h3><font style="color:#FF8C00;">Recent Publications</font></h3>  
<h3><font style="color:#FF8C00;">Recent Publications</font></h3>  
*Diaz, M., Pecinka, A. (2018): Scaffolding for Repair: Understanding Molecular Functions of the SMC5/6 Complex. Genes 9:E36. doi: 10.3390/genes9010036. [http://www.mdpi.com/2073-4425/9/1/36 Open access]
*Diaz, M., Pecinka, A. (2017): Seeds as emerging hotspot for maintenance of genome stability. Cytologia 82:467-470.
*van Esse G.W., Walla A., Finke A., Koornneef M., Pecinka A., von Korff M. (2017): Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174:2397-2408. doi: 10.1104/pp.17.00108. [http://www.plantphysiol.org/content/174/4/2397 Full text]
*Baroux C., Pecinka A., Fuchs J., Kreth G., Schubert I., Grossniklaus I (2017): Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma 126:115-124 [http://link.springer.com/article/10.1007%2Fs00412-016-0578-5 Open access]


*de Meaux J, Pecinka A. The Arabidopsis genus: An emerging model to elucidate the molecular basis of interspecific differences in transposable element activity. Mobile Genetic Elements 2:142-144 (2012). [[media:deMeaux-MES-2012.pdf| PDF]]
*Pecinka A, Mittelsten Scheid O. Stress-induced chromatin changes: A critical view on their heritability. Plant Cell Physiology doi: 10.1093/pcp/pcs044 (2012). [[media:Pecinka-PCP-2012.pdf| PDF]]
*Alcázar R, Pecinka A, Aarts MGM, Fransz PF, Koornneef M. Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Curr Opin Plant Biol 15:205-211 (2012). [http://www.sciencedirect.com/science/article/pii/S1369526612000039 abstract]
*Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O. Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biology 9:24 (2011). [[media:Pecinka-BMCPB-2011.pdf| PDF]]


*[[Pecinka_lab:Publications|see complete list...]]
*[[Pecinka_lab:Publications|see complete list...]]
Line 55: Line 48:


<h3><font style="color:red">News</font></h3>
<h3><font style="color:red">News</font></h3>
*2012-11-27: [[media: Post-doc-Pecinka_lab.pdf| Post-doc position in the "Analysis of two Australian crucifers as models for comparative -omics" is available in the Pecinka lab.]]
 
*2012-09-10: The mini-review on differential silencing of tranposable elements between ''A. thaliana'' and ''A.lyrata'' has been published in Mobile Genetic Elements [[media:deMeaux-MES-2012.pdf| PDF]]
*2018-04-15: Two PhD positions in seed development in barley (read more [[media:Pecinka_PhD_seed.pdf| PDF]]) and in understanding chromosome and chromatin organization in Arabidopsis and barley (full information [[media:Pecinka_IEB_chromosomes.pdf| PDF]])! In case of your interest please send your application to Ales Pecinka (pecinka@ueb.cas.cz).
*2012-03-28: The review on Stress-Induced Chromatin Changes was published in PCP [http://pcp.oxfordjournals.org/content/early/2012/03/28/pcp.pcs044.abstract]
*2018-03-05: Barbara Piwowarzkyk from University of Krakow joins our group as visiting scientist.
*2018-02-01: Pranav moves from MPIPZ Cologne to IEB Olomouc. Second Marie Curie fellowship for the institute. Wellcome, Pranav.
*2018-01-12: SMC5/6 complex, more than just DNA damage repair. Read our review! [http://www.mdpi.com/2073-4425/9/1/36 Open access].  
 
 


|}
|}
|}
|}
__NOTOC__
__NOTOC__

Latest revision as of 13:29, 15 April 2018


Home      Research      People      Publications      Protocols      Resources      Seminars      Positions      Lab life     


Research

Pecinka group is hosted by the Centre of Plant Structural and Functional Genomics, which is part of Institute of Experimental Botany of the Czech Academy of Sciences, v. v. i. in Olomouc, Czech Republic.

Our goal is understanding molecular and evolutionary mechanisms shaping plant genomes and epigenomes. We analyze how DNA sequence and chromatin changes are generated by endo- and exogenous factors and how these forces are balanced by the genome repair and epigenetic mechanisms. For our research we use mainly Arabidopsis thaliana and barley and analyze them by forward and reverse genetics, molecular, biochemical, cytogenetic and bioinformatic methods. read more...

Lab Members


see complete list...



Recent Publications

  • Diaz, M., Pecinka, A. (2018): Scaffolding for Repair: Understanding Molecular Functions of the SMC5/6 Complex. Genes 9:E36. doi: 10.3390/genes9010036. Open access
  • Diaz, M., Pecinka, A. (2017): Seeds as emerging hotspot for maintenance of genome stability. Cytologia 82:467-470.
  • van Esse G.W., Walla A., Finke A., Koornneef M., Pecinka A., von Korff M. (2017): Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174:2397-2408. doi: 10.1104/pp.17.00108. Full text
  • Baroux C., Pecinka A., Fuchs J., Kreth G., Schubert I., Grossniklaus I (2017): Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma 126:115-124 Open access

News

  • 2018-04-15: Two PhD positions in seed development in barley (read more PDF) and in understanding chromosome and chromatin organization in Arabidopsis and barley (full information PDF)! In case of your interest please send your application to Ales Pecinka (pecinka@ueb.cas.cz).
  • 2018-03-05: Barbara Piwowarzkyk from University of Krakow joins our group as visiting scientist.
  • 2018-02-01: Pranav moves from MPIPZ Cologne to IEB Olomouc. Second Marie Curie fellowship for the institute. Wellcome, Pranav.
  • 2018-01-12: SMC5/6 complex, more than just DNA damage repair. Read our review! Open access.



Retrieved from "https://openwetware.org/mediawiki/index.php?title=Pecinka_lab&oldid=1042966"