Pecinka Lab:Publications

Centre of Plant Structural and Functional Genomics Institute of Experimental Botany of the Czech Academy of Sciences, v. v. i. Šlechtitelů 31 Olomouc, CZ-783 71 Czech Republic Contact

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Publications Pecinka A, Mittelsten Scheid O. Stress-induced chromatin changes: A critical view on their heritability. Plant Cell Physiology doi: 10.1093/pcp/pcs044 (2012). [1] Alcázar R, Pecinka A, Aarts MGM, Fransz PF, Koornneef M. Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Curr Opin Plant Biol 15:205-211 (2012). [2] Pecinka A, Fang W, Rehmsmeier M, Levy AA, Mittelsten Scheid O. Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biology 9:24 (2011). [3] Pecinka, A., Dinh, H.Q., Rosa, M., Baubec, T., Lettner, N. and Mittelsten Scheid, O. Epigenetic control of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell 22:1-12 (2010). [4] Baubec, T., Dinh, H.Q., Pecinka, A., Rakic, B., Rozhon, W., Wohlrab, B., von Haeseler, A. and Mittelsten Scheid, O. Cooperation of Multiple Chromatin Modifications Can Generate Unanticipated Stability of Epigenetic States in Arabidopsis. Plant Cell 22: 34-47 (2010). [5] Pecinka, A., Rosa, M., Schikora, A., Berlinger, M., Hirt, H., Luschnig, C. and Mittelsten Scheid, O. Transgenerational stress memory is not a general response in Arabidopsis. PLoS One 4:e5202 (2009). [6] Baubec, T., Pecinka, A., Rozhon, W. and Mittelsten Scheid, O. Effective, homogeneous and transient interference with cytosine methylation in plant genomic DNA by zebularine. Plant Journal 57:542-554 (2009). [7] Jovtchev, G., Watanabe, K., Pecinka, A., Rosin, F.M., Mette, M.F., Lam, E. and Schubert, I. Size and number of tandem repeat arrays can determine somatic homologous pairing of transgene loci mediated by epigenetic modifications in Arabidopsis thaliana nuclei. Chromosoma 117:267-276 (2008). [8] Fischer, U., Kuhlmann, M., Pecinka, A., Schmidt, R. and Mette, M.F. Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation. Plant Journal 53:1-10 (2008). [9] Baroux, C., Pecinka, A., Fuchs, J., Schubert, I. and Grossniklaus, U. The triploid endosperm genome of Arabidopsis adopts a peculiar, parental-dosage-dependent chromatin organization. Plant Cell 19:1782-1794 (2007). [10] Berr, A., Pecinka, A., Meister, A., Kreth, G., Fuchs, J., Blattner, F.R., Lysak, M.A. and Schubert, I. Chromosome arrangement and nuclear architecture but not centromeric sequences are conserved between Arabidopsis thaliana and Arabidopsis lyrata. Plant Journal 48:771-783 (2006). [11] Kirik, A., Pecinka, A., Wendeler, E. and Reiss, B. The chromatin assembly factor subunit FASCIATA1 is involved in homologous recombination in plants. Plant Cell 18:2431-2442 (2006). [12] Pecinka, A., Suchankova, P., Lysak, M.A., Travnicek, B. and Dolezel, J. Nuclear DNA content variation among Central European Koeleria taxa. Annals of Botany 98:117-122 (2006). [13] Lysak, M.A., Berr, A., Pecinka, A., Schmidt, R., McBreen, K. and Schubert, I. Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species. Proceedings of the National Academy of Sciences USA 103:5224-5229 (2006). [14] Schubert, V., Klatte, M., Pecinka, A., Meister, A., Jasencakova, Z., Schubert, I. Sister chromatids are often incompletely cohesed in meristematic and endopolyploid interphase nuclei of Arabidopsis thaliana. Genetics 172:467-475 (2006). [15] Watanabe, K., Pecinka, A., Meister, A., Schubert, I. and Lam, E. DNA hypomethylation reduces homologous pairing of inserted tandem repeat arrays in somatic nuclei of Arabidopsis thaliana. Plant Journal 44:531-540 (2005). [16] Pecinka, A., Kato, N., Meister, A., Probst, A.V., Schubert, I. and Lam, E. Tandem repetitive transgenes and fluorescent chromatin tags alter the local interphase chromosome arrangement in Arabidopsis thaliana. Journal of Cell Science 118:3751-3758 (2005). [17] Lysak, M.A., Koch, M., Pecinka, A. and Schubert, I. Chromosome triplication found across the tribe Brassiceae. Genome Research 15:516-525 (2005). [18] Pecinka, A., Schubert, V., Meister, A., Kreth, G., Klatte, M., Lysak, M.A., Fuchs, J. and Schubert, I. Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes. Chromosoma 113:258-269 (2004). [19] Schubert, I., Pecinka, A., Meister, A., Schubert, V., Klatte, M. and Jovtchev, G. DNA damage processing and aberration formation in plants. Cytogenetic Genome Research 104:104-108 (2004). [20] Lysak, M.A., Pecinka, A. and Schubert, I. Recent progress in chromosome painting of Arabidopsis and related species. Chromosome Research 11:195-20 (2003). [21]