Paul Magnano: Week 9 Individual Journal

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Current revision (01:42, 3 April 2013) (view source)
(analysis of excel data)
 
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*How many genes have p value < 0.05?
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**none
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*What about p < 0.01?
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**none
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*What about p < 0.001?
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**none
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*What about p < 0.0001?
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**none
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*Keeping the "Pval" filter at p < 0.05, filter the "AvgLogFC" column to show all genes with an average log fold
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change greater than zero. How many meet these two criteria?
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**none
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*Keeping the "Pval" filter at p < 0.05, filter the "AvgLogFC" column to show all genes with an average log fold change less than zero. How many meet these two criteria?
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**none
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*Keeping the "Pval" filter at p < 0.05, How many have an average log fold change of > 0.25 and p < 0.05?
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**none
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*How many have an average log fold change of < -0.25 and p < 0.05? (These are more realistic values for the fold change cut-offs because it represents about a 20% fold change which is about the level of detection of this technology.)
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**none
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==NSR1==
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*avgFC:0.8
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*pvalue:0.9035
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==Smallest P value==
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*YLR194C 0.5000 @ t60
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**Function: Structural constituent of the cell wall attached to the plasma membrane by a GPI-anchor; expression is upregulated in response to cell wall stress
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**Why?: Cold possibly causes stress on the cell wall.
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*YKL177W 0.5000 @ t120
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**Function: Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene STE3
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**Why?:Not enough info on the gene is given to hypothesize the reason why its expression changes.

Current revision

Paul Magnano BIOL398-03/S13 User: Paul Magnano Image:223627 rossi+stoner+and+pedrosa+in+action+in+mugello+motogp-1280x960-jun1 jpg original.jpg

Contents

Class Journals

Assignments/Individul Journals

change greater than zero. How many meet these two criteria?

    • none
  • Keeping the "Pval" filter at p < 0.05, filter the "AvgLogFC" column to show all genes with an average log fold change less than zero. How many meet these two criteria?
    • none
  • Keeping the "Pval" filter at p < 0.05, How many have an average log fold change of > 0.25 and p < 0.05?
    • none
  • How many have an average log fold change of < -0.25 and p < 0.05? (These are more realistic values for the fold change cut-offs because it represents about a 20% fold change which is about the level of detection of this technology.)
    • none

NSR1

  • avgFC:0.8
  • pvalue:0.9035

Smallest P value

  • YLR194C 0.5000 @ t60
    • Function: Structural constituent of the cell wall attached to the plasma membrane by a GPI-anchor; expression is upregulated in response to cell wall stress
    • Why?: Cold possibly causes stress on the cell wall.
  • YKL177W 0.5000 @ t120
    • Function: Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene STE3
    • Why?:Not enough info on the gene is given to hypothesize the reason why its expression changes.
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