Paul Magnano: Week 9 Individual Journal: Difference between revisions
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*How many genes have p value < 0.05? | |||
**none | |||
*What about p < 0.01? | |||
**none | |||
*What about p < 0.001? | |||
**none | |||
*What about p < 0.0001? | |||
**none | |||
*Keeping the "Pval" filter at p < 0.05, filter the "AvgLogFC" column to show all genes with an average log fold | |||
change greater than zero. How many meet these two criteria? | |||
**none | |||
*Keeping the "Pval" filter at p < 0.05, filter the "AvgLogFC" column to show all genes with an average log fold change less than zero. How many meet these two criteria? | |||
**none | |||
*Keeping the "Pval" filter at p < 0.05, How many have an average log fold change of > 0.25 and p < 0.05? | |||
**none | |||
*How many have an average log fold change of < -0.25 and p < 0.05? (These are more realistic values for the fold change cut-offs because it represents about a 20% fold change which is about the level of detection of this technology.) | |||
**none | |||
==NSR1== | |||
*avgFC:0.8 | |||
*pvalue:0.9035 | |||
==Smallest P value== | |||
*YLR194C 0.5000 @ t60 | |||
**Function: Structural constituent of the cell wall attached to the plasma membrane by a GPI-anchor; expression is upregulated in response to cell wall stress | |||
**Why?: Cold possibly causes stress on the cell wall. | |||
*YKL177W 0.5000 @ t120 | |||
**Function: Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene STE3 | |||
**Why?:Not enough info on the gene is given to hypothesize the reason why its expression changes. |
Latest revision as of 22:42, 2 April 2013
Paul Magnano BIOL398-03/S13 User: Paul Magnano
Class Journals
- BIOL398-03/S13:Class Journal Week 1
- Paul N. Magnano Week 2 Shared Journal
- BIOL398-03/S13:Class Journal Week 3
- BIOL398-03/S13:Class Journal Week 4
- BIOL398-03/S13:Class Journal Week 5
- BIOL398-03/S13:Class Journal Week 8
- BIOL398-03/S13:Class Journal Week 9
- BIOL398-03/S13:Class Journal Week 11
- BIOL398-03/S13:Class Journal Week 12
- BIOL398-03/S13:Class Journal Week 13
- BIOL398-03/S13:Class Journal Week 14
Assignments/Individul Journals
- Paul Magnano:Assignment Week 2
- Paul Magnano:Week 3 Individual Journal
- Paul Magnano: Week 4 Individual Journal
- Paul Magnano: Week 5 Individual Journal
- Paul Magnano: Week 6 Indiviual Journal
- Paul/Jim Project #1
- Paul Magnano: Week 8 Individual Journal
- Paul Magnano: Week 9 Individual Journal
- Paul Magnano: Week 11 Individual Journal
- Paul Magnano: Week 12 Individual Journal
- Paul Magnano: Week 13 Individual Journal
- Paul Magnano: Week 14 Individual Journal
- How many genes have p value < 0.05?
- none
- What about p < 0.01?
- none
- What about p < 0.001?
- none
- What about p < 0.0001?
- none
- Keeping the "Pval" filter at p < 0.05, filter the "AvgLogFC" column to show all genes with an average log fold
change greater than zero. How many meet these two criteria?
- none
- Keeping the "Pval" filter at p < 0.05, filter the "AvgLogFC" column to show all genes with an average log fold change less than zero. How many meet these two criteria?
- none
- Keeping the "Pval" filter at p < 0.05, How many have an average log fold change of > 0.25 and p < 0.05?
- none
- How many have an average log fold change of < -0.25 and p < 0.05? (These are more realistic values for the fold change cut-offs because it represents about a 20% fold change which is about the level of detection of this technology.)
- none
NSR1
- avgFC:0.8
- pvalue:0.9035
Smallest P value
- YLR194C 0.5000 @ t60
- Function: Structural constituent of the cell wall attached to the plasma membrane by a GPI-anchor; expression is upregulated in response to cell wall stress
- Why?: Cold possibly causes stress on the cell wall.
- YKL177W 0.5000 @ t120
- Function: Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps the verified gene STE3
- Why?:Not enough info on the gene is given to hypothesize the reason why its expression changes.