Nescent ngs 2011:Notebook/nescent ngs 2011

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(Notes)
m (Welcome!)
Line 19: Line 19:
* I found this [http://www.kenkraaijeveld.nl/genomics/bioinformatics/ page] very helpful in just getting started  
* I found this [http://www.kenkraaijeveld.nl/genomics/bioinformatics/ page] very helpful in just getting started  
* Helpful notes and tutorials from the MSU course are [http://ged.msu.edu/angus/index.html here]
* Helpful notes and tutorials from the MSU course are [http://ged.msu.edu/angus/index.html here]
 +
* More from a Broad Institute workshop [http://www.broadinstitute.org/science/programs/medical-and-population-genetics/next-generation-sequencing-workshop-materials here]
* Some more [http://molecularevolution.org/ notes]
* Some more [http://molecularevolution.org/ notes]
* [http://sourceforge.net/apps/mediawiki/samtools/index.php?title=SAM_protocol Here]'s a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
* [http://sourceforge.net/apps/mediawiki/samtools/index.php?title=SAM_protocol Here]'s a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK

Revision as of 16:14, 1 December 2011

Search this Project

Customize your entry pages

Welcome!

  • Share notes and comments from the course and beyond!
  • Nescent hosted course materials are here
  • I found this page very helpful in just getting started
  • Helpful notes and tutorials from the MSU course are here
  • More from a Broad Institute workshop here
  • Some more notes
  • Here's a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
  • A more in-depth variant detection strategy based on GATK
  • GAGE

Notes

Please add notes by topic (note that some tools can be used in more than one analysis step):

Useful Links


Recent changes



Personal tools