Nescent ngs 2011:Notebook/nescent ngs 2011

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* Nescent hosted course materials are [https://www.nescent.org/sites/academy/NGS_2011_Course_Materials here]
* Nescent hosted course materials are [https://www.nescent.org/sites/academy/NGS_2011_Course_Materials here]
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* I found this [http://www.kenkraaijeveld.nl/genomics/bioinformatics/ page] very helpful in just getting started
* Helpful notes and tutorials from the MSU course are [http://ged.msu.edu/angus/index.html here]
* Helpful notes and tutorials from the MSU course are [http://ged.msu.edu/angus/index.html here]
* Some more [http://molecularevolution.org/ notes]
* Some more [http://molecularevolution.org/ notes]

Revision as of 16:24, 19 October 2011

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Welcome!

  • Share notes and comments from the course and beyond!
  • Nescent hosted course materials are here
  • I found this page very helpful in just getting started
  • Helpful notes and tutorials from the MSU course are here
  • Some more notes
  • Here's a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
  • A more in-depth variant detection strategy based on GATK
  • GAGE

Notes

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