Nescent ngs 2011:Notebook/nescent ngs 2011

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==Useful Links==
==Useful Links==
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* [http://biostar.stackexchange.com/ BioStar]
* [http://main.g2.bx.psu.edu/ Galaxy main]
* [http://main.g2.bx.psu.edu/ Galaxy main]
* [http://seqanswers.com/wiki/SEQanswers SEQanswers Wiki]
* [http://seqanswers.com/wiki/SEQanswers SEQanswers Wiki]
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* [http://molecularevolution.org/ molecularevolution.org]
 

Revision as of 16:19, 19 October 2011

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Welcome!

  • Share notes and comments from the course and beyond!
  • Nescent hosted course materials are here
  • Helpful notes and tutorials from the MSU course are here
  • Here's a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
  • A more in-depth variant detection strategy based on GATK
  • GAGE

Notes

Please add notes by topic (note that some tools can be used in more than one analysis step):

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