Nescent ngs 2011:Notebook/nescent ngs 2011

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==Useful Links==
==Useful Links==
* [ BioStar]
* [ Galaxy main]
* [ Galaxy main]
* [ SEQanswers Wiki]
* [ SEQanswers Wiki]
* []

Revision as of 16:19, 19 October 2011

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  • Share notes and comments from the course and beyond!
  • Nescent hosted course materials are here
  • Helpful notes and tutorials from the MSU course are here
  • Here's a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
  • A more in-depth variant detection strategy based on GATK
  • GAGE


Please add notes by topic (note that some tools can be used in more than one analysis step):

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