Nescent ngs 2011:Notebook/nescent ngs 2011

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m (Welcome!)
m (Notes)
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**[ FASTX-Toolkit]
**[ FASTX-Toolkit]
**[ Quake]
* Assembly, de novo
* Assembly, de novo
**[ SOAPdenovo]
**[ SOAPdenovo]

Revision as of 23:12, 11 October 2011

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  • Share notes and comments from the course and beyond!
  • Nescent hosted course materials are here
  • Helpful notes and tutorials from the MSU course are here
  • Here's a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
  • A more in-depth variant detection strategy based on GATK


Please add notes by topic (note that some tools can be used in more than one analysis step):

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