Nescent ngs 2011:Notebook/nescent ngs 2011

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* Nescent hosted course materials are [https://www.nescent.org/sites/academy/NGS_2011_Course_Materials here]
* Nescent hosted course materials are [https://www.nescent.org/sites/academy/NGS_2011_Course_Materials here]
* [http://sourceforge.net/apps/mediawiki/samtools/index.php?title=SAM_protocol Here]'s a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
* [http://sourceforge.net/apps/mediawiki/samtools/index.php?title=SAM_protocol Here]'s a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
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* A more detailed variant calling [http://www.broadinstitute.org/gsa/wiki/index.php/Best_Practice_Variant_Detection_with_the_GATK_v3 strategy] based on GATK
==Notes==
==Notes==

Revision as of 18:28, 20 September 2011

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Welcome!

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  • Nescent hosted course materials are here
  • Here's a nice overview of a basic alignment and variant calling workflow based on SAMtools and GATK
  • A more detailed variant calling strategy based on GATK

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