Nescent ngs 2011:Notebook/nescent ngs 2011

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**[http://bowtie-bio.sourceforge.net/index.shtml Bowtie]
**[http://bowtie-bio.sourceforge.net/index.shtml Bowtie]
**[http://bio-bwa.sourceforge.net/ BWA]
**[http://bio-bwa.sourceforge.net/ BWA]
-
**[http://www.novocraft.com/main/index.php Novoalign] - primarily useful for resequencing (i.e. aligning against a very similar reference genome); the free version does not support multithreading so be warned, also can email and ask for a license key (1-month free for non-profit users)
+
**[http://www.novocraft.com/main/index.php Novoalign] - primarily useful for resequencing (i.e. aligning against a very similar reference genome)
**[http://soap.genomics.org.cn/soapaligner.html SOAPaligner/SOAP2]  
**[http://soap.genomics.org.cn/soapaligner.html SOAPaligner/SOAP2]  
* RAD
* RAD

Revision as of 19:20, 20 September 2011

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