Nescent ngs 2011:Notebook/nescent ngs 2011

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**[http://bio-bwa.sourceforge.net/ BWA]
**[http://bio-bwa.sourceforge.net/ BWA]
**[http://www.novocraft.com/main/index.php Novoalign] - primarily useful for resequencing (i.e. aligning against a very similar reference genome); the free version does not support multithreading so be warned, also can email and ask for a license key (1-month free for non-profit users)
**[http://www.novocraft.com/main/index.php Novoalign] - primarily useful for resequencing (i.e. aligning against a very similar reference genome); the free version does not support multithreading so be warned, also can email and ask for a license key (1-month free for non-profit users)
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**[http://soap.genomics.org.cn/soapaligner.html SOAPaligner/SOAP2]
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**[http://soap.genomics.org.cn/soapaligner.html SOAPaligner/SOAP2]  
* RAD
* RAD
* Gene discovery and annotation
* Gene discovery and annotation
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* Further analyses
* Further analyses
* Visualization
* Visualization
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** [http://bioinf.scri.ac.uk/tablet/ Tablet] (I was trying to figure out how to look at SOAP output files and found this - SN)
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** [http://bioinf.scri.ac.uk/tablet/ Tablet]
==Useful Links==
==Useful Links==

Revision as of 11:38, 9 September 2011

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