Nescent ngs 2011:Notebook/nescent ngs 2011

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(Useful Links)
(Notes)
Line 24: Line 24:
* Quality Control
* Quality Control
[http://hannonlab.cshl.edu/fastx_toolkit/ FASTX-Toolkit]
[http://hannonlab.cshl.edu/fastx_toolkit/ FASTX-Toolkit]
 +
[http://sourceforge.net/apps/mediawiki/kmer/ kmer package]
* Assembly, de novo
* Assembly, de novo
[http://soap.genomics.org.cn/soapdenovo.html SOAPdenovo]
[http://soap.genomics.org.cn/soapdenovo.html SOAPdenovo]

Revision as of 15:33, 31 August 2011

Search this Project

Customize your entry pages

Welcome!

  • Share notes and comments from the course!
  • Nescent hosted course materials are here

Notes

Please add notes by topic:

  • Library prep and platform related
  • Quality Control

FASTX-Toolkit kmer package

  • Assembly, de novo

SOAPdenovo

  • Alignment

Bowtie Novoalign

  • RAD
  • Gene discovery and annotation
  • Variant calling
  • RNA-seq
  • Phylogenomics
  • Further analyses

Useful Links


Recent changes



Personal tools