Nescent ngs 2011:Notebook/nescent ngs 2011

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(Notes)
(Notes)
Line 23: Line 23:
* Library prep and platform related
* Library prep and platform related
* Quality Control
* Quality Control
-
* Assembly (de novo)
+
* Assembly, de novo
-
[http://bowtie-bio.sourceforge.net/index.shtml Bowtie]
+
-
[http://www.novocraft.com/main/index.php Novoalign]
+
[http://soap.genomics.org.cn/soapdenovo.html SOAPdenovo]
[http://soap.genomics.org.cn/soapdenovo.html SOAPdenovo]
* Alignment
* Alignment
 +
[http://bowtie-bio.sourceforge.net/index.shtml Bowtie]
 +
[http://www.novocraft.com/main/index.php Novoalign]
* RAD
* RAD
* Gene discovery and annotation
* Gene discovery and annotation

Revision as of 22:54, 28 August 2011

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Welcome!

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  • Nescent hosted course materials are here: [1]

Notes

Please add notes by topic:

  • Library prep and platform related
  • Quality Control
  • Assembly, de novo

SOAPdenovo

  • Alignment

Bowtie Novoalign

  • RAD
  • Gene discovery and annotation
  • Variant calling
  • RNA-seq
  • Phylogenomics
  • Further analyses


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