Mukhopadhyay:Publications: Difference between revisions
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==Refereed Publications== | ==Refereed Publications== | ||
===M group pubs=== | ===M group pubs=== | ||
#Frederix M, Hutter K, Leu J, Batth TS, Turner WJ, Rüegg TL, Blanch H, Simmons BA, Adams PD, Keasling JD, Thelen MP, Dunlop MJ, Petzold CJ, Mukhopadhyay A* Development of a native Escherichia coli induction system for ionic liquid tolerance ''Plos One'' '''2014''' ( | #Mingardon F, Clement C, Hirano K, Nhan M, Luning EG, Chanal A, Mukhopadhyay A* Improving olefin tolerance and production in E. coli using native and evolved AcrB. ''Biotechnology and Bioengineering''. '''2015''' [http://onlinelibrary.wiley.com/doi/10.1002/bit.25511/pdf online] | ||
#Ray J, Keller KL, Catena M, Juba TR, Zemla M, Rajeev L, Knierim B, Zane GM, Robertson J, Auer M, Wall JD, Mukhopadhyay A* Exploring the role of CheA3 in Desulfovibrio vulgaris Hildenborough motility ''Frontiers in Microbiology'' '''2014''' [http:// | #Foo JL, Jensen HM, Dahl RH, George K, Keasling JD, Lee TS,Leong SSJ, Mukhopadhyay A*. Improving microbial bio-gasoline production in ''Escherichia coli'' using tolerance engineering. ''mBio'' '''2014''' [http://mbio.asm.org/content/5/6/e01932-14 open access] | ||
#Rajeev L, Luning,EG, Altenburg S, Zane GM, Baidoo EE, Catena M, Keasling JD, Wall JD, Fields MW, Mukhopadhyay A*. Identification of a cyclic-di-GMP-modulating response regulator that impacts biofilm formation in a model sulfate reducing bacterium. ''Frontiers in Microbiology 5.'' '''2014''' [http://journal.frontiersin.org/Journal/10.3389/fmicb.2014.00382/abstract open access] | |||
#Frederix M, Hutter K, Leu J, Batth TS, Turner WJ, Rüegg TL, Blanch H, Simmons BA, Adams PD, Keasling JD, Thelen MP, Dunlop MJ, Petzold CJ, Mukhopadhyay A* Development of a native Escherichia coli induction system for ionic liquid tolerance ''Plos One'' '''2014''' [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0101115 online] | |||
#Rajeev, L.*, Luning, E. G., Mukhopadhyay, A. DNA-affinity-purified Chip (DAP-chip) Method to Determine Gene Targets for Bacterial Two component Regulatory Systems. ''J. Vis. Exp.'' '''2014''' | |||
#Ray J, Keller KL, Catena M, Juba TR, Zemla M, Rajeev L, Knierim B, Zane GM, Robertson J, Auer M, Wall JD, Mukhopadhyay A* Exploring the role of CheA3 in Desulfovibrio vulgaris Hildenborough motility ''Frontiers in Microbiology'' '''2014'''[http://journal.frontiersin.org/Journal/10.3389/fmicb.2014.00077/abstract open access] | |||
# Szmidt-Middleton HL, Ouellet M, Adams PD, Keasling JD, Mukhopadhyay A*. Utilizing a highly responsive gene, ''yhjX'', in ''E. coli'' based production of 1,4-Butanediol ''CES'' '''2013''' [http://www.sciencedirect.com/science/article/pii/S0009250913004673 open access] | # Szmidt-Middleton HL, Ouellet M, Adams PD, Keasling JD, Mukhopadhyay A*. Utilizing a highly responsive gene, ''yhjX'', in ''E. coli'' based production of 1,4-Butanediol ''CES'' '''2013''' [http://www.sciencedirect.com/science/article/pii/S0009250913004673 open access] | ||
#Rajeev L, da Rocha U, Klitgord N, Luning E, Fortney J, Axen S, Shih P, Bouskill N, Bowen B, Kerfeld C, Garcia-Pichel F, Brodie E, Northen T*, Mukhopadhyay A*. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. ''ISME J'' '''2013''' [http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej201383a.html open access] | #Rajeev L, da Rocha U, Klitgord N, Luning E, Fortney J, Axen S, Shih P, Bouskill N, Bowen B, Kerfeld C, Garcia-Pichel F, Brodie E, Northen T*, Mukhopadhyay A*. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. ''ISME J'' '''2013''' [http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej201383a.html open access] | ||
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===Collaborations=== | ===Collaborations=== | ||
#Rocha UN* , Cadillo-Quiroz H, Karaoz U, Rajeev L, Klitgord N, Dunn S, Truong V, Buenrostro M, Bowen BP, Garcia-Pichel F, Mukhopadhyay A, Northen TR and Brodie EL, Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust ''Front. Microbiol'' '''2015''' | |||
#Ghosh A, Nilmeier J, Weaver D, Adams PD, Keasling JD, Mukhopadhyay A, Petzold CJ, García-Martín H.A Peptide-Based Method for 13C Metabolic Flux Analysis in Microbial Communities. ''PLoS Comput Biol'' '''2014''' | |||
#Dahl RH, Zhang F, Alonso-Gutierrez J, Baidoo E, Batth TS, Redding-Johanson AM, Petzold CJ, Mukhopadhyay A, Lee TS, Adams PD et al: Engineering dynamic pathway regulation using stress-response promoters. ''Nat Biotechnol'' '''2013'''. | #Dahl RH, Zhang F, Alonso-Gutierrez J, Baidoo E, Batth TS, Redding-Johanson AM, Petzold CJ, Mukhopadhyay A, Lee TS, Adams PD et al: Engineering dynamic pathway regulation using stress-response promoters. ''Nat Biotechnol'' '''2013'''. | ||
#Kazakov A, Rajeev L, Luning EG, Zane G, Siddartha K, Rodionov D, Dubchak I, Arkin A, Wall J, Mukhopadhyay A, Novichkov P. A new family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria" ''J Bact'' '''2013''' | #Kazakov A, Rajeev L, Luning EG, Zane G, Siddartha K, Rodionov D, Dubchak I, Arkin A, Wall J, Mukhopadhyay A, Novichkov P. A new family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria" ''J Bact'' '''2013''' | ||
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==Patents== | ==Patents== | ||
#Dunlop, Mary J.; Keasling, Jay D.; Mukhopadhyay, Aindrila Modified Host Cells with Efflux Pumps U.S. Patent Application Ser. No: 13/115,925 25-May-2011. [http://www.freepatentsonline.com/y2011/0294183.html online] or Go to Berkeley lab [http://www.lbl.gov/Tech-Transfer/techs/lbnl2845.html Tech Transfer] | #Dunlop, Mary J.; Keasling, Jay D.; Mukhopadhyay, Aindrila Modified Host Cells with Efflux Pumps U.S. Patent Application Ser. No: 13/115,925 25-May-2011. [http://www.freepatentsonline.com/y2011/0294183.html online] or Go to Berkeley lab [http://www.lbl.gov/Tech-Transfer/techs/lbnl2845.html Tech Transfer] | ||
#Mukhopadhyay, Aindrila; Mingardon, Florence; Chanal, Angelique. Modified Host Cells Having tolerance to α-Olefins. U.S. Patent Application Ser. No: 61/986,669 30-Apr-2014. | |||
==Recent invited talks== | ==Recent invited talks== | ||
#Mukhopadhyay A, Engineering Solvent Tolerant Bacteria: A Systems Biology Guided Effort, Genomic Science Contractors-Grantees Meeting XIII/USDA-DOE Plant Feedstock Genomics for Bioenergy Meeting, Washington DC, USA, Feb 22-25 2015 [https://www.orau.gov/gsp2015/agenda.htm link] | |||
#Mukhopadhyay A, Engineering Microbial Solvent Tolerance, Departmental Seminar, Dept of Chemical engineering, IIT, Mumbai, India, Feb 10th 2015 | |||
#Mukhopadhyay A, Engineering Microbial Solvent Tolerance, Indo-US Conference and Workshop in Systems and Synthetic Biology, New Delhi, India, Nov 9-12 2014 [https://icares.wustl.edu/programs/Pages/Indo-US-Workshop-on-Synthetic-and-Systems-Biology.aspx link] | |||
#Mukhopadhyay A, Engineering Microbial Solvent Tolerance, SIMB, St Louise MO, USA, Jul 24th 2014 | |||
#Mukhopadhyay A, Engineering Microbial Solvent Tolerance, Bioenergy and Photosynthesis Seminar, ASU, Tempe, AZ USA Feb 20th 2014 | |||
#Mukhopadhyay A, Dynamic response of biological soil crust to wetting and drying events, 12th Biennial Conference of Science and Management on the Colorado Plateau Northern Arizona University, Flagstaff, Sept 18th 2013 | |||
# Mukhopadhyay A, Engineering Microbial Solvent Tolerance, Energy Biosciences Institute Seminar Series, Berkeley CA, USA Sept 3rd 2013 [https://cc.readytalk.com/cc/playback/Playback.do?id=3jyojd see talk] | # Mukhopadhyay A, Engineering Microbial Solvent Tolerance, Energy Biosciences Institute Seminar Series, Berkeley CA, USA Sept 3rd 2013 [https://cc.readytalk.com/cc/playback/Playback.do?id=3jyojd see talk] | ||
# Mukhopadhyay A Presenting at Science at the Theater event, [http://today.lbl.gov/2013/05/16/lab-researchers-discuss-their-%E2%80%98big-ideas%E2%80%99-at-recent-science-at-the-theater-talk/ Eight Big Ideas], Berkeley Repertory Theater, Berkeley CA USA May 13th 2013 | # Mukhopadhyay A Presenting at Science at the Theater event, [http://today.lbl.gov/2013/05/16/lab-researchers-discuss-their-%E2%80%98big-ideas%E2%80%99-at-recent-science-at-the-theater-talk/ Eight Big Ideas], Berkeley Repertory Theater, Berkeley CA USA May 13th 2013 |
Revision as of 13:12, 19 March 2015
Refereed PublicationsM group pubs
Collaborations
M Postdoc and Graduate Research
Book Chapters, Invited articles and Reports
Patents
Recent invited talks
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