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[[Image:Mukhopadhyay_Pump.jpg‎ |thumb|500px|right|Efflux Pumps provide a direct mechanism to alleviate product toxicity (Image prepared by [http://www.jbei.org/management/people2.shtml Everett Kaplan] (JBEI))]]
[[Image:Mukhopadhyay_Pump.jpg‎ |thumb|220px|right|Efflux Pumps provide a direct mechanism to alleviate product toxicity (Image prepared by [http://www.jbei.org/management/people2.shtml Everett Kaplan] (JBEI))]]
<font face="calibri" size="+1" style="color:#000000">Welcome to the Mukhopadhyay Group page!!
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We are an interdisciplinary team at the [http://www.lbl.gov/ Berkeley Lab] studying signaling, stress response and tolerance in both environmental and engineered organisms. As the host engineering group at [http://jbei.org/index.html JBEI] we adopt targeted and systems biology approaches to elucidate causes of inhibition during fuel/ solvent production from lignocellulose using the microbes such as ''Escherichia coli'' and ''Saccharomyces cerevisiae''. We hope to engineer better hosts for metabolite production and develop tools that are universally useful for microbial cellular engineering. We are part of the [http://enigma.lbl.gov/ ENIGMA] project where our research includes the study of two component signaling in the model sulfate reducing bacterium ''Desulfovibrio vulgaris'' Hildenborough. In other bioremediation projects we address degradation of organophosphate and phosphonate compounds. We also study wetting events and signaling in the fabulous cyanobacteria that dominate the desert soil crusts on our planet.
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More about [http://openwetware.org/wiki/User:Aindrila_Mukhopadhyay Aindrila]
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We are funded by:
 
[[Image:Doe-bioenergy-research-cent.jpg|75px|http://genomicscience.energy.gov/centers/]]
[[Image:LBNL-Logo-Full.png|75px|http://www.lbl.gov]]
[[Image:ENIGMA_logo.jpg|75px|http://enigma.lbl.gov/ENIGMA]]
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__NOTOC__
== '''GROUP NEWS!!''' ==
 
 
=== Feb 26th 2014===
[[Image:QUEST CAREER SPOTLIGHT.png|thumb|300px|left|KQED QUEST Career spotlight [http://www.youtube.com/watch?v=DMXHbi6XBQw video]]]
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=== June 6th 2013===
[[Image:Rajeev et al 2013 Figure 1.jpg|thumb|300px|right|Lara's Microcoleus Desert soil crust paper in online in the [http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej201383a.html ISME Journal]!]] And we get a wonderful article in [http://newscenter.lbl.gov/feature-stories/2013/06/14/biological-soil-crust-secrets-uncovered TABL] by [http://www.lynnyarris.com/ Lynn Yarris].
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=== May 13th 2013===
[[Image:SAT-2013-05-13.jpg|thumb|130px|left|]] We get a chance to [http://www.youtube.com/watch?v=JHMFkI2Xx10 talk] about our research at the Berkeley Rep at the Science at the theater organised by [http://www.lbl.gov/LBL-PID/fobl/ Friends of the Berkeley Lab]!
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=== March 19th 2013===
[[Image:Energy dot gov screen shot.jpg|thumb|350px|left| [http://energy.gov/articles/making-stem-personal-introducing-women-energy-series women at energy]]]We get a [http://energy.gov/diversity/articles/women-energy-aindrila-mukhopadhyay mention] in the Department Of Energy feature on STEM profiles. 
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=== Oct 1st 2012===
[[Image:Mukhopadhyay group Sept 2012.jpg|thumb|500px|right|Left to Right: Kavya, Melissa, Nhat-Tan, Lara, Marijke, Camille, Florence, Jee-Loon, Aindrila, Eric, Heather, Zain and Amanda]] The whole group at the Can't Fail cafe. We have new members in the group - Amanda Reider Appel and Nhat Than Vuong!
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=== Feb 14th 2012 ===
[[Image:Screen shot 2012-02-14 at 1.51.17 PM.png|thumb|400px|left|]] Science Today, a UC Berkeley Radio channel, features [http://www.ucop.edu/sciencetoday/article/27039 comments] on our study of the ''D. vulgaris'' two component system regulator network.
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=== Nov 9th 2011 ===
[[Image:Response regulator Map News Article.png|thumb|250px|right|]] Lara and Eric's Response Regulator Map [http://genomebiology.com/2011/12/10/R99 paper] gets written about in Berkeley Lab's [http://newscenter.lbl.gov/news-releases/2011/11/09/gene-map-of-sulfate-reducing-bacterium/ TABL] site.
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<font face="calibri" size="+1" style="color:#000000">Welcome to the Mukhopadhyay Group page!!
<br>
<br>
<br>
We are an interdisciplinary team at the [http://www.lbl.gov/ Berkeley Lab] studying signaling and stress response in both environmental and engineered organisms.
<br>
<br>
<br>
We are part of the [http://enigma.lbl.gov/ ENIGMA] project where our research includes the study of two component signaling the model sulfate reducing bacterium ''Desulfovibrio vulgaris'' Hildenborough. As part of the [http://www.jbei.org/index.shtml Joint BioEnergy Institute] we adopt targeted and systems biology approaches to elucidate causes of inhibition during fuel production from lignocellulose using the host microbes such as ''Escherichia coli'' and ''Saccharomyces cerevisiae''. We hope to engineer better hosts for fuel production and develop tools that are universally useful for microbial cellular engineering. Recently we have also become interested in studying signaling and response in cyanobacteria that dominate desert soil crusts.
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== '''GROUP NEWS!!''' ==


=== August 22nd 2011 ===
 
[[Image:13140229931868-200x256-noup.jpg|thumb|150px|left]] Zain, Heather and Aindrila feature on the cover of the [http://www.biorefiningmagazine.com/issues/browse/ Biorefining magazine]. Here is the [http://www.biorefiningmagazine.com/articles/5732/the-bio-academic-entrepreneurs article].
 
 
=== Oct 15th 2011 ===
[[Image:Lara Openhouse.jpg|thumb|300px|left|(Lara at the Soil crust display at the [http://www.lbl.gov/openhouse/ Berkeley Lab open house])]] [http://openwetware.org/wiki/User:Lara_Rajeev Lara] and Eric's ''D. vulgaris'' Response Regulator map paper is out in [http://genomebiology.com/2011/12/10/R99 Genome Biology].  
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=== Sept 27th 2011 ===
[[Image:Image for biabolene paper.jpg|thumb|250px|right|(Photo by Roy Kaltschmidt, Berkeley Lab)]] [http://openwetware.org/wiki/User:Mario_Ouellet Mario] (in the blue lab coat!!) features in the Berkeley Lab news letter [http://newscenter.lbl.gov/news-releases/2011/09/27/jbei-scientists-identify-bisabolane-as-an-alternative-to-diesel-fuel/ TABL] for his important contribution in developing Bisabolene production in yeast. Here is a link to Pamela and TaekSoon's [http://www.nature.com/ncomms/journal/v2/n9/full/ncomms1494.html Nature Communications paper]
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=== July 1st 2011 ===
[[Image:Microbe magazine pump blurb.jpg|thumb|200px|left]] Our [http://www.nature.com/msb/journal/v7/n1/full/msb201121.html efflux pump paper] gets a [http://www.microbemagazine.org/index.php/07-2011-current-topics/3541-minitopics mention] in the Microbe magazine. Other mentions of our study are in [http://www.eurekalert.org/pub_releases/2011-05/dbnl-str051111.php eureka alert], [http://tech-blog.org/energy-news/cluster155792/ techblog], [http://www.sciencedaily.com/releases/2011/05/110511131143.htm science daily], [http://www.microbeworld.org/index.php?option=com_jlibrary&view=article&id=6754 microbeworld], [http://www.sciencedirect.com/science/article/pii/S1369702111701560 Materials Today] to list a few!!!


=== August 22nd 2011 ===
[[Image:13140229931868-200x256-noup.jpg|thumb|150px|left]] [http://openwetware.org/wiki/User:Zain_Y_Dossani Zain], [http://openwetware.org/wiki/User:Heather_Szmidt Heather] and Aindrila feature on the cover of the [http://www.biorefiningmagazine.com/issues/browse/ Biorefining magazine]. Here is the [http://www.biorefiningmagazine.com/articles/5732/the-bio-academic-entrepreneurs article].
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=== July 1st 2011 ===
[[Image:Microbe magazine pump blurb.jpg|thumb|200px|left]] Our [http://www.nature.com/msb/journal/v7/n1/full/msb201121.html efflux pump paper] gets a [http://www.microbemagazine.org/index.php/07-2011-current-topics/3541-minitopics mention] in the Microbe magazine. Other mentions of our study are in [http://www.eurekalert.org/pub_releases/2011-05/dbnl-str051111.php eureka alert], [http://tech-blog.org/energy-news/cluster155792/ techblog], [http://www.sciencedaily.com/releases/2011/05/110511131143.htm science daily], [http://www.microbeworld.org/index.php?option=com_jlibrary&view=article&id=6754 microbeworld], [http://www.sciencedirect.com/science/article/pii/S1369702111701560 Materials Today] to list a few!!!
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[[Image:Doe-bioenergy-research-cent.jpg|75px|http://genomicscience.energy.gov/centers/]]
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[[Image:LBNL-Logo-Full.png|75px|http://www.lbl.gov]]
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Revision as of 09:54, 8 April 2014

About us            Contact            People            Research            Pubs etc            Internal           


Efflux Pumps provide a direct mechanism to alleviate product toxicity (Image prepared by Everett Kaplan (JBEI))

Welcome to the Mukhopadhyay Group page!!

We are an interdisciplinary team at the Berkeley Lab studying signaling, stress response and tolerance in both environmental and engineered organisms. As the host engineering group at JBEI we adopt targeted and systems biology approaches to elucidate causes of inhibition during fuel/ solvent production from lignocellulose using the microbes such as Escherichia coli and Saccharomyces cerevisiae. We hope to engineer better hosts for metabolite production and develop tools that are universally useful for microbial cellular engineering. We are part of the ENIGMA project where our research includes the study of two component signaling in the model sulfate reducing bacterium Desulfovibrio vulgaris Hildenborough. In other bioremediation projects we address degradation of organophosphate and phosphonate compounds. We also study wetting events and signaling in the fabulous cyanobacteria that dominate the desert soil crusts on our planet.

More about Aindrila

We are funded by:

http://genomicscience.energy.gov/centers/ http://www.lbl.gov http://enigma.lbl.gov/ENIGMA




GROUP NEWS!!

Feb 26th 2014

KQED QUEST Career spotlight video











June 6th 2013

Lara's Microcoleus Desert soil crust paper in online in the ISME Journal!
And we get a wonderful article in TABL by Lynn Yarris.















May 13th 2013

We get a chance to talk about our research at the Berkeley Rep at the Science at the theater organised by Friends of the Berkeley Lab!















March 19th 2013

women at energy
We get a mention in the Department Of Energy feature on STEM profiles.













Oct 1st 2012

Left to Right: Kavya, Melissa, Nhat-Tan, Lara, Marijke, Camille, Florence, Jee-Loon, Aindrila, Eric, Heather, Zain and Amanda
The whole group at the Can't Fail cafe. We have new members in the group - Amanda Reider Appel and Nhat Than Vuong!














Feb 14th 2012

Science Today, a UC Berkeley Radio channel, features comments on our study of the D. vulgaris two component system regulator network.









Nov 9th 2011

Lara and Eric's Response Regulator Map paper gets written about in Berkeley Lab's TABL site.











Oct 15th 2011

(Lara at the Soil crust display at the Berkeley Lab open house)
Lara and Eric's D. vulgaris Response Regulator map paper is out in Genome Biology.










Sept 27th 2011

(Photo by Roy Kaltschmidt, Berkeley Lab)
Mario (in the blue lab coat!!) features in the Berkeley Lab news letter TABL for his important contribution in developing Bisabolene production in yeast. Here is a link to Pamela and TaekSoon's Nature Communications paper










August 22nd 2011

Zain, Heather and Aindrila feature on the cover of the Biorefining magazine. Here is the article.










July 1st 2011

Our efflux pump paper gets a mention in the Microbe magazine. Other mentions of our study are in eureka alert, techblog, science daily, microbeworld, Materials Today to list a few!!!








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