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[[Image:Pond.jpg|thumb|right|Mimulus guttatus]]
[[Image:Pond.jpg|thumb|right|Mimulus guttatus]]
=The ''Mimulus'' Community=
=The ''Mimulus'' Community=
This Wiki page has not been updated since 2009.


==General Info==
==Announcements==
The genus ''Mimulus'' (historically "Scrophulariaceae," order Lamiales) has been a [http://www.mimulusevolution.org/ model plant system] for ecological and evolutionary genetics for over 50 years (Vickery, 1951).  Check out the [http://www.isu.edu/~bearpau2/Mimposter.html poster] of the phylogeny of the ''Mimulus'' genus.
[[Image:Mimi.jpg|thumb|right|Mimulus Meeting 2006 at Duke University]]
[[Image:GroupPhotoOct07.jpg|thumb|right|Mimulus Meeting 2007 at NESCent]]


===''Mimulus guttatus'' Complex===
*The ''Mimulus guttatus'' IM62 genome assembly and preliminary annotation is now available for search and download from [http://www.phytozome.net/mimulus Phytozome].
*Download the [[Media:List.doc|contact info]] for people who attended the 2007 Mimulus meeting in Durham, NC.
*There are now 436 [[Media:Mimulus_populations_3_22_09.xls|''Mimulus'' populations]] currently stored at the Duke University Seed Stock Center, as of March 2009


The ''Mimulus guttatus'' species complex (yellow monkey flowers) is a group of closely related species exhibiting the common evolutionary transition from outcrossing to self-pollination. ''Mimulus'' presents an excellent model system for studies of evolution because of its broad diversity of floral morphologies, incomplete reproductive barriers, and its amenability to experimental manipulation.
==The Genus ''Mimulus''==
 
The genus ''Mimulus'' (historically "Scrophulariaceae," order Lamiales) has been a [http://www.mimulusevolution.org/ model plant system] for ecological and evolutionary genetics for over 50 years (Vickery, 1951).
===''Mimulus lewisii'' Complex===
 
==People==
[[Image:Good.jpg|thumb|right|Mimulus lewisii and Mimulus cardinalis with hybrids]]
{| width:100%; height:300px border="7"
|-
| '''Labs'''
*[[Willis:Research|John Willis]]
*[http://biology.umt.edu/dbs/Lilafishman.htm Lila Fishman]
*[http://faculty.washington.edu/toby/ Toby Bradshaw]
*[http://visionlab.bio.unc.edu/ Todd Vision]
*[http://www.genetics.forestry.ubc.ca/ritland/ Kermit Ritland]
*[http://www.plantbiology.msu.edu/schemske.shtml Doug Schemske]
*[http://www.ubcbotanicalgarden.org/research/cronk.php Quentin Cronk]
*[http://www.isu.edu/~bearpau2/ Paul Beardsley]
*[http://www.biology.utah.edu/faculty2.php?inum=49 Bob Vickery]
*[http://www.ku.edu/~eeb/faculty/kellyj.html John Kelly]
*[http://www3.uakron.edu/biology/mitchell/index.html Randall Mitchell]
*[http://www.uwm.edu/Dept/Biology/Docs/Faculty/karron.html Jeffery Karron]
*[http://www.ex.ac.uk/~MRMacnai/welcome.html Mark Macnair]
*[http://dept.kent.edu/biology/ACwebpage-KSU.HTM Andrea Case]
*[http://www.life.umd.edu/biology/dudashlab/dudashlabpage.html Michele Dudash]
 
 
|'''Post-Docs'''
 
*[http://purugganan.gnets.ncsu.edu/people/people.html Megan Hall]
*[http://www.msu.edu/%7Eangertam/ Amy Angert]
*[http://ecoevo.bio.uci.edu/Graduate/GradStudentAlumni.html Carrie Wu]
*[[Willis:Bouck|Amy Bouck]]
*[http://www-biology.ucsd.edu/~mstreisf/ Matt Streisfeld]
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
| '''Grad Students'''
*[http://www.biology.duke.edu/willislab/ariellepersonal.html Arielle Cooley]
*[http://www.biology.duke.edu/willislab/ywhapers.html Young-Wa Lee]
*[http://www.biology.duke.edu/willislab/andreapersonal.html Andrea Sweigart]
*[[David Lowry]]
*[[Kevin Wright]]
*[http://students.washington.edu/crp7/ Christina Pince]
*[http://students.washington.edu/kbrady/ Kristy Brady]
*[http://www.agronomy.ucdavis.edu/bigscience/ Jason Sexton]
*[http://www.kbs.msu.edu/gradstudents/#sobel Jay Sobel]


*Check out the [http://www.isu.edu/~bearpau2/Mimposter.html poster] of the phylogeny of the ''Mimulus'' genus. 


* Read a recent review about [http://www.nature.com/hdy/journal/vaop/ncurrent/abs/6801018a.html;jsessionid=6761F6C5882CFD97F5AF796018F91361  ''Mimulus'' as an emerging model system for the integration of ecological and genomic studies.]


*See descriptions of [[Mimulus Species]]


==The ''Mimulus'' Genome==
The Joint Genome Institute (JGI/DOE) completed 7X coverage of the ''Mimulus'' genome in Spring 2007.  An assembly of the 7x genome was completed in Summer 2008.  Members of the ''Mimulus'' Community are currently annotating the Genome and working on a final assembly of the sequenced scaffolds.  The ''Mimulus'' Genome can be accessed though [http://www.phytozome.net/ Phytozome].




 
==Seed Collections==
 
Duke University is now the home to the collection of seeds from over 425 populations of ''Mimulus''.  The seed collections are primarily composed of seeds from within the ''Mimulus guttatus'' complex. Most of these seeds can be made available for upon request. Please allow a few weeks for orders to be fulfilled. [[Media:‎Mimulus_populations_3_22_09.xls|Mimulus collections list]]
 
 
 
 
 
|}
 
==Announcements==
*The annual ''Mimulus'' Meeting was held Febuary 17-19, 2006 at Duke University.   
[[Image:Mimi.jpg|thumb|right|Mimulus Meeting 2006 at Duke University]]
*JGI should complete 8x coverage of the ''Mimulus guttatus'' genome by the end of January 2007
 
==Papers==
*[http://www.biology.utah.edu/faculty3.php?inum=49 Vickery]
*[[Ritland]]
*[[Beardsley]]
*[[Bradshaw]]
*[[MacNair]]


==Techniques==
==Techniques==


*[[DNA Extraction Protocol]]
#[[Mimulus:DNA Extraction Protocol|DNA Extraction Protocol]]
*[[Microsatellite recipes]]
#[[Mimulus:Microsatellite recipes|Microsatellite Recipes]]
 
#[[Mimulus:Seed Sterilization|Seed Sterilization]]
==Seed Collections==
Below is an excel spreadsheet that lists the seed collections of ''Mimulus'' that are currently located at Duke University.  The seed collections are primarily composed of seeds from within the ''Mimulus guttatus'' complex. Most of these seeds can be made available for upon request.  Please allow a few weeks for orders to be fulfilled.  Contact [[David Lowry]] at david.lowry@duke.edu for seed requests or information about collection locations.
 
*[[:Image:Mimulus populations.xls|Collection Spreadsheet]]
 
==Mimulus Discussion Page==
Check out the [[Mimulus Discussion Page]] to see what people in the community are saying and leave your own messages.  Make sure to leave you name and date of entry for all additions.
 
==Mimulus web sites==
 
*[http://www.mimulusevolution.org/ Mimulus Biological Resource Center]
*[http://www.genome.clemson.edu/projects/mimulus/ Clemson University Genomics Institute website]
*[http://www.ncbi.nlm.nih.gov/blast/mmtrace.shtml Blast the NCBI Trace Archives]
*[http://www.ex.ac.uk/~MRMacnai/guttatus.html ''Mimulus guttatus'' complex]
*[http://www.jgi.doe.gov/sequencing/why/CSP2006/mimulus.html JGI annoncement of whole genome sequencing]
*[http://www.efloras.org/florataxon.aspx?flora_id=2&taxon_id=120756 Mimulus Flora of China]
*[http://www-biol.paisley.ac.uk/bioref/Plantae_Mimulus/Mimulus.html Biodiversity]
 
==Bioinformatic Software and Resources==
*[http://www.fruitfly.org/annot/apollo/ Apollo]
*[http://globin.cse.psu.edu/html/docs/sim4.html sim4]
*[http://genome.ucsc.edu/ BLAT]
*[http://www.ncbi.nlm.nih.gov/blast/mmtrace.shtml NCBI Trace Archives]
*[http://www.ebi.ac.uk/clustalw/ ClustalW]
*[http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi Primer 3]

Latest revision as of 07:09, 16 November 2014

Mimulus guttatus

The Mimulus Community

This Wiki page has not been updated since 2009.

Announcements

Mimulus Meeting 2006 at Duke University
Mimulus Meeting 2007 at NESCent
  • The Mimulus guttatus IM62 genome assembly and preliminary annotation is now available for search and download from Phytozome.
  • Download the contact info for people who attended the 2007 Mimulus meeting in Durham, NC.
  • There are now 436 Mimulus populations currently stored at the Duke University Seed Stock Center, as of March 2009

The Genus Mimulus

The genus Mimulus (historically "Scrophulariaceae," order Lamiales) has been a model plant system for ecological and evolutionary genetics for over 50 years (Vickery, 1951).

  • Check out the poster of the phylogeny of the Mimulus genus.

The Mimulus Genome

The Joint Genome Institute (JGI/DOE) completed 7X coverage of the Mimulus genome in Spring 2007. An assembly of the 7x genome was completed in Summer 2008. Members of the Mimulus Community are currently annotating the Genome and working on a final assembly of the sequenced scaffolds. The Mimulus Genome can be accessed though Phytozome.


Seed Collections

Duke University is now the home to the collection of seeds from over 425 populations of Mimulus. The seed collections are primarily composed of seeds from within the Mimulus guttatus complex. Most of these seeds can be made available for upon request. Please allow a few weeks for orders to be fulfilled. Mimulus collections list

Techniques

  1. DNA Extraction Protocol
  2. Microsatellite Recipes
  3. Seed Sterilization
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