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=The ''Mimulus'' Community=
=The ''Mimulus'' Community=


==General Info==
Become a [[Mimulus membership|member]] today.
The genus ''Mimulus'' (historically "Scrophulariaceae," order Lamiales) has been a [http://www.mimulusevolution.org/ model plant system] for ecological and evolutionary genetics for over 50 years (Vickery, 1951).  Check out the [http://www.isu.edu/~bearpau2/Mimposter.html poster] of the phylogeny of the ''Mimulus'' genus.


===''Mimulus guttatus'' Complex===
==Announcements== 
[[Image:Mimi.jpg|thumb|right|Mimulus Meeting 2006 at Duke University]]
[[Image:GroupPhotoOct07.jpg|thumb|right|Mimulus Meeting 2007 at NESCent]]
 
*The ''Mimulus guttatus'' IM62 genome assembly and preliminary annotation is now available for search and download from [http://www.phytozome.net/mimulus Phytozome].
*Download the [[Media:List.doc|contact info]] for people who attended the 2007 Mimulus meeting in Durham, NC.
*There are now 436 [[Media:Mimulus_populations_3_22_09.xls|''Mimulus'' populations]] currently stored at the Duke University Seed Stock Center, as of March 2009
 
==The Genus ''Mimulus''==
The genus ''Mimulus'' (historically "Scrophulariaceae," order Lamiales) has been a [http://www.mimulusevolution.org/ model plant system] for ecological and evolutionary genetics for over 50 years (Vickery, 1951). 
 
*Check out the [http://www.isu.edu/~bearpau2/Mimposter.html poster] of the phylogeny of the ''Mimulus'' genus. 
 
* Read a recent review about [http://www.nature.com/hdy/journal/vaop/ncurrent/abs/6801018a.html;jsessionid=6761F6C5882CFD97F5AF796018F91361  ''Mimulus'' as an emerging model system for the integration of ecological and genomic studies.]


The ''Mimulus guttatus'' species complex (yellow monkey flowers) is a group of closely related species exhibiting the common evolutionary transition from outcrossing to self-pollination. ''Mimulus'' presents an excellent model system for studies of evolution because of its broad diversity of floral morphologies, incomplete reproductive barriers, and its amenability to experimental manipulation.
*See descriptions of [[Mimulus Species]]


===''Mimulus lewisii''  Complex===
==The ''Mimulus'' Genome==
The Joint Genome Institute (JGI/DOE) completed 7X coverage of the ''Mimulus'' genome in Spring 2007. An assembly of the 7x genome was completed in Summer 2008.  Members of the ''Mimulus'' Community are currently annotating the Genome and working on a final assembly of the sequenced scaffolds.  The ''Mimulus'' Genome can be accessed though [http://www.phytozome.net/ Phytozome].


==People==
==People==
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|-  
|-  
| '''Labs'''
| '''Labs'''
*[[Willis:Research|John Willis]]
*[http://rydberg.biology.colostate.edu/angert/index.html Amy Angert]
*[http://biology.umt.edu/dbs/Lilafishman.htm Lila Fishman]
*[http://faculty.washington.edu/toby/ Toby Bradshaw]
*[http://faculty.washington.edu/toby/ Toby Bradshaw]
*[http://visionlab.bio.unc.edu/ Todd Vision]
*[[Anna Blenda]]
*[http://www.genetics.forestry.ubc.ca/ritland/ Kermit Ritland]
*[http://people.virginia.edu/~dec5z/decarr.html David Carr]
*[http://www.plantbiology.msu.edu/schemske.shtml Doug Schemske]
*[http://bioweb.biology.kent.edu/FacultyPages/Case/ Andrea Case]
*[http://www.ubcbotanicalgarden.org/research/cronk.php Quentin Cronk]
*[http://www.ubcbotanicalgarden.org/research/cronk.php Quentin Cronk]
*[http://www.isu.edu/~bearpau2/ Paul Beardsley]
*[http://www.life.umd.edu/biology/dudashlab/dudashlabpage.html Michele Dudash]
*[http://www.biology.utah.edu/faculty2.php?inum=49 Bob Vickery]
*[http://dbs.umt.edu/research%5Flabs/fishmanlab/ Lila Fishman]
*[http://ag.arizona.edu/pls/faculty/gang.htm David Gang]
*[http://myweb.csuchico.edu/~ctivey/Ivey_research.html Chris Ivey]
*[http://www.uwm.edu/Dept/Biology/Docs/Faculty/karron.html Jeffery Karron]
*[http://www.ku.edu/~eeb/faculty/kellyj.html John Kelly]
*[http://www.ku.edu/~eeb/faculty/kellyj.html John Kelly]
*[http://www.cofc.edu/%7Emurrenc/ Courtney Murren]
*[http://www.genetics.forestry.ubc.ca/ritland/ Kermit Ritland]
*[http://plantbiology.msu.edu/faculty/faculty-research/doug-schemske/ Doug Schemske]
*[http://ceeb.uoregon.edu/faculty_pages/Streisfeld.shtml Matt Streisfeld]
*[http://www.ex.ac.uk/~MRMacnai/welcome.html Mark Macnair]
*[http://www.bio.txstate.edu:16080/~martin/ Noland Martin]
*[http://www.coevolucion.cl/Rodrigo%20Medel/Rodrigo%20Medel.html Rodrigo Medel]
*[http://www3.uakron.edu/biology/mitchell/index.html Randall Mitchell]
*[http://www3.uakron.edu/biology/mitchell/index.html Randall Mitchell]
*[http://www.uwm.edu/Dept/Biology/Docs/Faculty/karron.html Jeffery Karron]
*[http://mcb.berkeley.edu/index.php?option=com_mcbfaculty&name=rokhsard Dan Rokhsar]
*[http://www.ex.ac.uk/~MRMacnai/welcome.html Mark Macnair]
*[http://www.biology.utah.edu/faculty2.php?inum=49 Bob Vickery]
*[http://dept.kent.edu/biology/ACwebpage-KSU.HTM Andrea Case]
*[http://visionlab.bio.unc.edu/ Todd Vision]
*[http://www.life.umd.edu/biology/dudashlab/dudashlabpage.html Michele Dudash]
*[http://www.biology.duke.edu/willislab/ John Willis]
*[http://biology.richmond.edu/faculty/Wu_Carrie.html Carrie Wu]




|'''Post-Docs'''
|'''Post-Docs'''
 
*[[Arielle Cooley]]
*[http://evodevo.uoregon.edu/people/blackman.html Ben Blackman]
*[http://www.eeob.iastate.edu/faculty/WendelJ/lexflagel.htm Lex Flagel]
*[http://labs.eeb.utoronto.ca/barrett/Friedman.html Jannice Friedman]
*[http://www.unc.edu/~ganko Eric Ganko]
*[http://purugganan.gnets.ncsu.edu/people/people.html Megan Hall]
*[http://purugganan.gnets.ncsu.edu/people/people.html Megan Hall]
*[http://www.msu.edu/%7Eangertam/ Amy Angert]
*[http://entomology.wisc.edu/~holeski/ Liza Holeski]
*[http://ecoevo.bio.uci.edu/Graduate/GradStudentAlumni.html Carrie Wu]
*[http://openwetware.org/wiki/User:Young_Wha_Lee Young Wha Lee]
*[[Willis:Bouck|Amy Bouck]]
*[[Mimulus:David Lowry|David Lowry]]
*[http://www-biology.ucsd.edu/~mstreisf/ Matt Streisfeld]
*[http://www.rochester.edu/College/BIO/labs/ORRLAB/andrea.html Andrea Sweigart]
 
*[http://sites.google.com/site/yaowuyuanswebpage/ Yaowu Yuan]
 
 
 
 
 




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| '''Grad Students'''
| '''Grad Students'''
*[http://www.biology.duke.edu/willislab/ariellepersonal.html Arielle Cooley]  
*[http://rintintin.colorado.edu/~bakerrl/Rob_Baker_Plant_Evolution_and_Development/Evolution_and_Development_of_Plant_Architecture.html Rob Baker]
*[http://www.biology.duke.edu/willislab/ywhapers.html Young-Wa Lee]  
*[http://biotype.biology.dal.ca/mjohnst/People.html Magdalena Bartkowska]
*[http://www.biology.duke.edu/willislab/andreapersonal.html Andrea Sweigart]
*[http://students.washington.edu/kjbyers/ Kelsey Byers]
*[[David Lowry]]
*[http://www.genetics.forestry.ubc.ca/ritland/people.html Charles Chen]
*[[Kevin Wright]]
*[[Katie Ferris]]
*[http://anabaena.net/mimulus.php Naomi Fraga]
*[http://www.biology.wustl.edu/faculty/templeton/People/Nick's%20Page/Griffin.html Nick Griffin]
*[[Dena Grossenbacher]]
*[http://www.eve.ucdavis.edu/systrauss/people.htm Jon Haloin]
*[[Deborah Lloyd]]  
*[[Jennifer Modliszewski]]
*[http://students.washington.edu/crp7/ Christina Pince]
*[http://students.washington.edu/crp7/ Christina Pince]
*[http://students.washington.edu/kbrady/ Kristy Brady]
*[http://www.plantsciences.ucdavis.edu/Ricelab/ Jason Sexton]
*[http://www.agronomy.ucdavis.edu/bigscience/ Jason Sexton]
*[http://www.mobot.org/MOBOT/Research/curators/sheth.shtml Seema Sheth]
*[http://www.kbs.msu.edu/gradstudents/#sobel Jay Sobel]
*[http://sobel.schemskelab.plantbiology.msu.edu Jay Sobel]
 
*[[Mimulus:Kevin Wright|Kevin Wright]]
 
 
 
 




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|}
|}


==Announcements==
==Seed Collections==
*The annual ''Mimulus'' Meeting was held Febuary 17-19, 2006 at Duke University.   
Duke University is now the home to the collection of seeds from over 425 populations of ''Mimulus''.  The seed collections are primarily composed of seeds from within the ''Mimulus guttatus'' complex. Most of these seeds can be made available for upon request. Please allow a few weeks for orders to be fulfilled. [[Media:‎Mimulus_populations_3_22_09.xls|Mimulus collections list]]
[[Image:Mimi.jpg|thumb|right|Mimulus Meeting 2006 at Duke University]]
*JGI should complete 8x coverage of the ''Mimulus guttatus'' genome by the end of January 2007
 
==Papers==
*[http://www.biology.utah.edu/faculty3.php?inum=49 Vickery]
*[[Ritland]]
*[[Beardsley]]
*[[Bradshaw]]
*[[MacNair]]


==Techniques==
==Techniques==


#[[DNA Extraction Protocol]]
#[[Mimulus:DNA Extraction Protocol|DNA Extraction Protocol]]
#[[Microsatellite recipes]]
#[[Mimulus:Microsatellite recipes|Microsatellite Recipes]]
 
#[[Mimulus:Seed Sterilization|Seed Sterilization]]
==Seed Collections==
Below is an excel spreadsheet that lists the seed collections of ''Mimulus'' that are currently located at Duke University.  The seed collections are primarily composed of seeds from within the ''Mimulus guttatus'' complex. Most of these seeds can be made available for upon request.  Please allow a few weeks for orders to be fulfilled.  Contact [[David Lowry]] at david.lowry@duke.edu for seed requests or information about collection locations.
 
*[[:Image:Mimulus populations.xls|Collection Spreadsheet]]
 
==Mimulus Discussion Page==
Check out the [[Mimulus Discussion Page]] to see what people in the community are saying and leave your own messages.  Make sure to leave you name and date of entry for all additions.
 
==Mimulus web sites==
 
*[http://www.mimulusevolution.org/ Mimulus Biological Resource Center]
*[http://www.genome.clemson.edu/projects/mimulus/ Clemson University Genomics Institute website]
*[http://www.ncbi.nlm.nih.gov/blast/mmtrace.shtml Blast the NCBI Trace Archives]
*[http://www.ex.ac.uk/~MRMacnai/guttatus.html ''Mimulus guttatus'' complex]
*[http://www.jgi.doe.gov/sequencing/why/CSP2006/mimulus.html JGI annoncement of whole genome sequencing]
*[http://www.efloras.org/florataxon.aspx?flora_id=2&taxon_id=120756 Mimulus Flora of China]
*[http://www-biol.paisley.ac.uk/bioref/Plantae_Mimulus/Mimulus.html Biodiversity]
 
==Bioinformatic Software and Resources==
*[http://www.fruitfly.org/annot/apollo/ Apollo]
*[http://globin.cse.psu.edu/html/docs/sim4.html sim4]
*[http://genome.ucsc.edu/ BLAT]
*[http://www.ncbi.nlm.nih.gov/blast/mmtrace.shtml NCBI Trace Archives]
*[http://www.ebi.ac.uk/clustalw/ ClustalW]
*[http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi Primer 3]

Revision as of 13:47, 8 December 2010

Mimulus guttatus

The Mimulus Community

Become a member today.

Announcements

Mimulus Meeting 2006 at Duke University
Mimulus Meeting 2007 at NESCent
  • The Mimulus guttatus IM62 genome assembly and preliminary annotation is now available for search and download from Phytozome.
  • Download the contact info for people who attended the 2007 Mimulus meeting in Durham, NC.
  • There are now 436 Mimulus populations currently stored at the Duke University Seed Stock Center, as of March 2009

The Genus Mimulus

The genus Mimulus (historically "Scrophulariaceae," order Lamiales) has been a model plant system for ecological and evolutionary genetics for over 50 years (Vickery, 1951).

  • Check out the poster of the phylogeny of the Mimulus genus.

The Mimulus Genome

The Joint Genome Institute (JGI/DOE) completed 7X coverage of the Mimulus genome in Spring 2007. An assembly of the 7x genome was completed in Summer 2008. Members of the Mimulus Community are currently annotating the Genome and working on a final assembly of the sequenced scaffolds. The Mimulus Genome can be accessed though Phytozome.

People

Mimulus lewisii and Mimulus cardinalis with hybrids
Labs


Post-Docs







Grad Students





Seed Collections

Duke University is now the home to the collection of seeds from over 425 populations of Mimulus. The seed collections are primarily composed of seeds from within the Mimulus guttatus complex. Most of these seeds can be made available for upon request. Please allow a few weeks for orders to be fulfilled. Mimulus collections list

Techniques

  1. DNA Extraction Protocol
  2. Microsatellite Recipes
  3. Seed Sterilization
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