Mesoplasma florum: Tn5 Transposase

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Revision as of 17:07, 19 March 2008

Tn5 Transposase production

Tn5 transposase is the key enzyme in forming transposomes for random transposon insertions. It is sold by Epicentre at ridiculously high price. Here, we make it from a plasmid provided by Prof. Wolfgang Hillen PMID 16820464. The protocol also builds on the NEB IMPACT-CN protein purification kit.

Materials

Protocol

• Grow BL21(DE3)pLysS cells transformed with pWH1891 in 10 ml culture.
• Inoculate 2 liters of LB/Cm/Amp culture medium with the culture and grow overnight at 23°C
• Induce cultures at OD 0.5 with 50 mM IPTG and grow an additional 5 hours
• Spin down cultures and resuspend in 50 ml TEGX buffer/original liter, transferring to 50 ml centrifuge tubes
• Spin down a second time and resuspend in 10 ml/original liter TEGX + Roche Complete protease inhibitor
• Sonicate 3x pausing 10 minutes between sonications with the cells on ice
• Centrifuge to remove cell debris
• Load a 2 cm diameter column with 20 ml chitin bead suspension (10 ml beads)
• Wash the column with 100 ml TEGX buffer
• Load the cell supernatent onto the column and allow it to flow through
• Flow the supernatent past the column a second time
• Wash the column with 200 ml TEGX buffer
• Add 1 ml of 1M IPTG to 20 ml of TEGX buffer
• Flow the 20 ml IPTG + TEGX into the column
• Cap the column and hold at 4°C overnight
• Recover the protein with 10 ml TEGX buffer flowed through the column

Molarity

• Gel runs at 55 KD, approximately correct for a 450 AA protein.
• Kostner06 uses 100-500 fmol DNA + 5x excess protein, or .5 - 2.5 pmol
• 1 pmol protein = 55000 g/mol * 1e-12 mol = 55 ng
• 1 pmol transposon = 2700 * 660 * 1e-12 = 1.8 ug
• 100 fmol transposon = 180 ng

DNA binding tests

• Use constant 200 ng of DNA (dilute from 1 ug/ul stock)
• Use serial dilutions of protein starting at 8 ug/ul
  • 2x dilutions 0, 2, 1, 500, 250, 125, 62.5, 31.25, 15.6, 0 into 20ul TEGX + 200 ng/ul transposon DNA
• Incubate 30 minutes at 37
• Run on 0.8% E-Gel
• DNA mixture 10*200 ng = 2 ug DNA = 2 ul DNA into 200 ul TEGX

Gel images, Goryshin00

• Fig 1, 1.8 Kb transposon reacted at 2.5 ng/ul with Tn5 transposase at 10 ng/ul in 400 ul final volume, 1 hour at 37C
  • this is 181 fmol/ul of DNA and 5.5 pmol/ul transposase, or a 30x molar excess of transposase
  • Concentrated to 20 ul and run on a 1.2% gel
• 3.7 Kb transposon reacted at 50 ng/ul with Tn5 transposase at 10 ng/ul in 40 ul volume, 1 hour at 37C
  • this is 1.8 pmol/ul DNA and 5.5 pmol/ul transposase, for a 3x molar excess

References

• NEB IMPACT-CN web page
• Goryshin00