Mesoplasma florum:Codon usage: Difference between revisions

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Revision as of 19:10, 2 March 2007

The codon usage table for Mesoplasma florum is here:

Mesoplasma florum L1 [gbbct]: 683 CDS's (245761 codons) AmAcid Codon Number /1000 Fraction ..


Amino acid Codon Number Number / 1000 Probability EC Probability Compromise Probability
Gly GGG 848 3.45 0.06 .15
Gly GGA 5717 23.26 0.43 .11
Gly GGT 6147 25.01 0.47 .34
Gly GGC 461 1.88 0.03 .40
Glu GAG 1543 6.28 0.09 .31
Glu GAA 16303 66.34 0.91 .69
Asp GAT 10918 44.43 0.83 .63
Asp GAC 2203 8.96 0.17 .37
Val GTG 632 2.57 0.04 .37
Val GTA 4237 17.24 0.28 .15
Val GTT 9660 39.31 0.65 .26
Val GTC 344 1.40 0.02 .22
Ala GCG 519 2.11 0.04 .36
Ala GCA 6198 25.22 0.46 .21
Ala GCT 6297 25.62 0.47 .16
Ala GCC 522 2.12 0.04 .27
Arg AGG 194 0.79 0.03 .02
Arg AGA 5448 22.17 0.80 .04
Ser AGT 3752 15.27 0.23 .15
Ser AGC 935 3.80 0.06 .28
Lys AAG 2110 8.59 0.09 .23
Lys AAA 21721 88.38 0.91 .77
Asn AAT 13612 55.39 0.77 .45
Asn AAC 4161 16.93 0.23 .55
Met ATG 5660 23.03 1.00 1.00
Ile ATA 7748 31.53 0.32 .07
Ile ATT 14701 59.82 0.60 .51
Ile ATC 1968 8.01 0.08 .42
Thr ACG 211 0.86 0.02 .27
Thr ACA 7243 29.47 0.55 .13
Thr ACT 5558 22.62 0.42 .17
Thr ACC 274 1.11 0.02 .44
Trp TGG 101 0.41 0.04 1.00
Trp TGA 2489 10.13 0.96 0.0
Cys TGT 1275 5.19 0.85 .45
Cys TGC 228 0.93 0.15 .55
End TAG 132 0.54 0.19 .07
End TAA 551 2.24 0.81 .64
Tyr TAT 7191 29.26 0.78 .57
Tyr TAC 1972 8.02 0.22 .43
Leu TTG 1765 7.18 0.08 .13
Leu TTA 15736 64.03 0.71 .13
Phe TTT 10293 41.88 0.81 .57
Phe TTC 2391 9.73 0.19 .43
Ser TCG 206 0.84 0.01 .16
Ser TCA 7413 30.16 0.46 .12
Ser TCT 3585 14.59 0.22 .15
Ser TCC 92 0.37 0.01 .15
Arg CGG 6 0.02 0.00 .10
Arg CGA 128 0.52 0.02 .06
Arg CGT 998 4.06 0.15 .38
Arg CGC 67 0.27 0.01 .40
Gln CAG 404 1.64 0.05 .65
Gln CAA 7058 28.72 0.95 .35
His CAT 2211 9.00 0.73 .57
His CAC 836 3.40 0.27 .43
Leu CTG 182 0.74 0.01 .50
Leu CTA 1690 6.88 0.08 .04
Leu CTT 2682 10.91 0.12 .10
Leu CTC 52 0.21 0.00 .10
Pro CCG 203 0.83 0.03 .52
Pro CCA 3516 14.31 0.57 .19
Pro CCT 2306 9.38 0.37 .16
Pro CCC 157 0.64 0.03 .12
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