Melaminometer Specific Sequences: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
No edit summary
No edit summary
Line 1: Line 1:
==Melamine degradation pathway==
==Melamine degradation pathway==
===Melamine deaminase (Acidovorax avenae subsp. citrulli)===
===Melamine deaminase (Acidovorax avenae subsp. citrulli)===
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=AAG41202.1 Protein sequence]
====[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=AAG41202.1 Protein sequence]====


<pre>>gi|11890745|gb|AAG41202.1|AF312304_1 melamine deaminase [Acidovorax avenae subsp. citrulli]
<pre>>gi|11890745|gb|AAG41202.1|AF312304_1 melamine deaminase [Acidovorax avenae subsp. citrulli]
Line 12: Line 12:
VDTVLIDGNVVMENRRLSFLPPERELAFLEEAQSRATAILQRANMVANPAWRSL</pre>
VDTVLIDGNVVMENRRLSFLPPERELAFLEEAQSRATAILQRANMVANPAWRSL</pre>


[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=11890744&from=1&to=1425&view=gbwithparts Nucleotide sequence] (1425 bp)
====[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=11890744&from=1&to=1425&view=gbwithparts Nucleotide sequence] (1425 bp)====


<pre>>gi|11890744:1-1425 Pseudomonas sp. NRRL B-12227 melamine deaminase (triA) gene, complete cds
<pre>>gi|11890744:1-1425 Pseudomonas sp. NRRL B-12227 melamine deaminase (triA) gene, complete cds
Line 37: Line 37:
TAACCCAGCTTGGCGCAGCCTCTAG</pre>
TAACCCAGCTTGGCGCAGCCTCTAG</pre>


===Ammelide aminohydrolase===
===Ammelide aminohydrolase (Acidovorax avenae subsp. citrulli)===
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=AAK00493.1 Protein sequence]
====[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=AAK00493.1 Protein sequence]====


<pre>>gi|12644702|gb|AAK00493.1| ammelide aminohydrolase [Acidovorax avenae subsp. citrulli]
<pre>>gi|12644702|gb|AAK00493.1| ammelide aminohydrolase [Acidovorax avenae subsp. citrulli]
Line 48: Line 48:
RMLGFPSLLGVVEGAVADLAVFPSATPEEVVLDQQSPLFVLKGGRVVAMRLAAGSTSFRDYS</pre>
RMLGFPSLLGVVEGAVADLAVFPSATPEEVVLDQQSPLFVLKGGRVVAMRLAAGSTSFRDYS</pre>


[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=12644694&from=11082&to=12320&view=gbwithparts Nucleotide sequence] (1239 bp)
====[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=12644694&from=11082&to=12320&view=gbwithparts Nucleotide sequence] (1239 bp)====


<pre>>gi|12644694:11082-12320 Acidovorax avenae subsp. citrulli s-triazine ring-cleavage gene region  
<pre>>gi|12644694:11082-12320 Acidovorax avenae subsp. citrulli s-triazine ring-cleavage gene region  
Line 69: Line 69:
CGGCGACGCCCGAGGAGGTTGTTCTGGATCAACAGTCTCCGCTCTTCGTACTCAAGGGCGGACGTGTCGT  
CGGCGACGCCCGAGGAGGTTGTTCTGGATCAACAGTCTCCGCTCTTCGTACTCAAGGGCGGACGTGTCGT  
TGCCATGCGATTGGCCGCTGGATCAACGTCGTTCCGCGACTACTCATGA</pre>
TGCCATGCGATTGGCCGCTGGATCAACGTCGTTCCGCGACTACTCATGA</pre>
==Cyanurate degradation pathway==
===Cyanuric acid amidohydrolase (Acidovorax avenae subsp. citrulli)===
====[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=AAC61577.1 Protein sequence]====
<pre>>gi|3659839|gb|AAC61577.1| cyanuric acid amidohydrolase [Acidovorax avenae subsp. citrulli]
MQAQVFRVPMSNPADVSGVAKLIDEGVIRAEEVVCVLGKTEGNGCVNDFTRGYTTLAFKVYFSEKLGVSR
QEVGERIAFIMSGGTEGVMAPHCTIFTVQKTDNKQKTAAEGKRLAVQQIFTREFLPEEIGRMPQVTETAD
AVRRAMREAGIADASDVHFVQVKCPLLTAGRMHDAVERGHTVATEDTYESMGYSRGASALGIALALGEVE
KANLSDEVITADYSLYSSVASTSAGIELMNNEIIVMGNSRAWGGDLVIGHAEMKDAIDGAAVRQALRDVG
CCENDLPTVDELGRVVNVFAKAEASPDGEVRNRRHTMLDDSDINSTRHARAVVNAVIASIVGDPMVYVSG
GSEHQGPAGGGPVAVIARTA</pre>
====[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=12644694&from=8966&to=10078&view=gbwithparts Nucleotide sequence] (1113 bp)====
<pre>>gi|12644694:8966-10078 Acidovorax avenae subsp. citrulli s-triazine ring-cleavage gene region
ATGCAAGCGCAAGTTTTTCGAGTTCCAATGAGTAATCCAGCCGATGTTAGTGGCGTAGCCAAGCTCATCG
ATGAGGGAGTGATCCGTGCCGAAGAGGTCGTCTGCGTTCTCGGCAAGACCGAAGGCAACGGCTGTGTCAA
TGACTTCACGCGTGGCTACACCACCCTCGCGTTCAAGGTCTACTTCTCCGAGAAACTGGGCGTGTCCCGG
CAAGAGGTCGGCGAGCGCATCGCTTTCATCATGTCCGGCGGTACCGAAGGCGTCATGGCGCCTCACTGCA
CCATCTTCACCGTGCAGAAGACGGACAACAAGCAGAAGACCGCCGCTGAAGGCAAGCGACTTGCCGTTCA
GCAGATCTTTACCCGCGAGTTCCTGCCGGAGGAGATCGGCCGCATGCCGCAGGTCACGGAAACAGCCGAC
GCTGTTCGCCGCGCCATGCGCGAAGCCGGCATCGCGGATGCATCCGATGTCCACTTCGTTCAGGTCAAGT
GCCCACTGCTCACTGCCGGCCGCATGCATGACGCTGTCGAGCGCGGGCATACGGTTGCCACCGAAGATAC
CTATGAGTCCATGGGCTACTCCCGCGGCGCATCCGCGCTTGGTATCGCCCTGGCCCTCGGGGAAGTCGAG
AAGGCCAACCTCAGTGATGAAGTTATTACCGCAGACTACAGTCTCTACTCCTCGGTTGCCTCAACTTCGG
CGGGTATCGAGTTGATGAACAACGAGATCATCGTCATGGGCAACAGCCGCGCATGGGGTGGTGACCTCGT
CATCGGCCACGCCGAGATGAAGGACGCCATCGACGGTGCAGCGGTCCGGCAGGCCCTGCGCGACGTCGGG
TGCTGCGAGAACGACCTGCCGACCGTCGACGAGCTCGGCCGCGTGGTCAATGTATTTGCCAAGGCTGAAG
CCTCCCCGGACGGTGAGGTTCGTAACCGCCGCCACACGATGCTGGACGATTCGGACATTAACAGCACGCG
CCATGCGCGAGCGGTCGTCAATGCAGTTATCGCTTCGATCGTGGGAGATCCCATGGTTTATGTCTCCGGC
GGCTCCGAGCATCAGGGCCCCGCCGGTGGCGGTCCCGTTGCAGTTATCGCGCGCACAGCTTAA</pre>

Revision as of 00:18, 16 October 2008

Melamine degradation pathway

Melamine deaminase (Acidovorax avenae subsp. citrulli)

Protein sequence

>gi|11890745|gb|AAG41202.1|AF312304_1 melamine deaminase [Acidovorax avenae subsp. citrulli]
MQTLSIQHGTLVTMDQYRRVLGDSWVHVQDGRIVALGVHAESVPPPADRVIDARGKVVLPGFINAHTHVN
QILLRGGPSHGRQLYDWLFNVLYPGQKAMRPEDVAVAVRLYCAEAVRSGITTINDNADSAIYPGNIEAAM
AVYGEVGVRVVYARMFFDRMDGRIQGYVDALKARSPQVELCSIMEETAVAKDRITALSDQYHGTAGGRIS
VWPAPAITPAVTVEGMRWAQAFARDRAVMWTLHMAESDHDERLHWMSPAEYMECYGLLDERLQVAHCVYF
DRKDVRLLHRHNVKVASQVVSNAYLGSGVAPVPEMVERGMAVGIGTDDGNCNDSVNMIGDMKFMAHIHRA
VHRDADVLTPEKILEMATIDGARSLGMDHEIGSIETGKRADLILLDLRHPQTTPHHHLAATIVFQAYGNE
VDTVLIDGNVVMENRRLSFLPPERELAFLEEAQSRATAILQRANMVANPAWRSL

Nucleotide sequence (1425 bp)

>gi|11890744:1-1425 Pseudomonas sp. NRRL B-12227 melamine deaminase (triA) gene, complete cds
ATGCAAACGCTCAGCATCCAGCACGGTACCCTCGTCACGATGGATCAGTACCGCAGAGTCCTTGGGGATA
GCTGGGTTCACGTGCAGGATGGACGGATCGTCGCGCTCGGAGTGCACGCCGAGTCGGTGCCTCCGCCAGC
GGATCGGGTGATCGATGCACGCGGCAAGGTCGTGTTACCCGGTTTCATCAATGCCCACACCCATGTGAAC
CAGATCCTCCTGCGCGGAGGGCCCTCGCACGGGCGTCAACTCTATGACTGGCTGTTCAACGTTTTGTATC
CGGGACAAAAGGCGATGAGACCGGAGGACGTAGCGGTGGCGGTGAGGTTGTATTGTGCGGAAGCTGTGCG
CAGCGGGATTACGACGATCAACGACAACGCCGATTCGGCCATCTACCCAGGCAACATCGAGGCCGCGATG
GCGGTCTATGGTGAGGTGGGTGTGAGGGTCGTCTACGCCCGCATGTTCTTTGATCGGATGGACGGGCGCA
TTCAAGGGTATGTGGACGCCTTGAAGGCTCGCTCTCCCCAAGTCGAACTGTGCTCGATCATGGAGGAAAC
GGCTGTGGCCAAAGATCGGATCACAGCCCTGTCAGATCAGTATCATGGCACGGCAGGAGGTCGTATATCA
GTTTGGCCCGCTCCTGCCATTACCCCGGCGGTGACAGTTGAAGGAATGCGATGGGCACAAGCCTTCGCCC
GTGATCGGGCGGTAATGTGGACGCTTCACATGGCGGAGAGCGATCATGATGAGCGGCTTCATTGGATGAG
TCCCGCCGAGTACATGGAGTGTTACGGACTCTTGGATGAGCGTCTGCAGGTCGCGCATTGCGTGTACTTT
GACCGGAAGGATGTTCGGCTGCTGCACCGCCACAATGTGAAGGTCGCGTCGCAGGTTGTGAGCAATGCCT
ACCTCGGCTCAGGGGTGGCCCCCGTGCCAGAGATGGTGGAGCGCGGCATGGCCGTGGGCATTGGAACAGA
TGACGGGAATTGTAATGACTCCGTAAACATGATCGGAGACATGAAGTTTATGGCCCATATTCACCGCGCG
GTGCATCGGGATGCGGACGTGCTGACCCCAGAGAAGATTCTTGAAATGGCGACGATCGATGGGGCGCGTT
CGTTGGGAATGGACCACGAGATTGGTTCCATCGAAACCGGCAAGCGCGCGGACCTTATCCTGCTTGACCT
GCGTCACCCTCAGACGACTCCTCACCATCATTTGGCGGCCACGATCGTGTTTCAGGCTTACGGCAATGAG
GTGGACACTGTCCTGATTGACGGAAACGTTGTGATGGAGAACCGCCGCTTGAGCTTTCTTCCCCCTGAAC
GTGAGTTGGCGTTCCTTGAGGAAGCGCAGAGCCGCGCCACAGCTATTTTGCAGCGGGCGAACATGGTGGC
TAACCCAGCTTGGCGCAGCCTCTAG

Ammelide aminohydrolase (Acidovorax avenae subsp. citrulli)

Protein sequence

>gi|12644702|gb|AAK00493.1| ammelide aminohydrolase [Acidovorax avenae subsp. citrulli]
MSMETHSYVDVAIRNARLADTEGIVDILIHDGRIASIVKSTKTKGSVEIDAHEGLVTSGLVEPHIHLDKA
LTADRVPAGSIGDLRTRRGLEMAIRATRDIKRTFTVEDVRERAIRAALMASRAGTTALRTHVDVDPIVGL
AGIRGVLEAREVCAGLIDIQIVAFPQEGLFCSAGAVDLMREAIKLGADAVGGAPALDDRPQDHVRAVFDL
AAEFGLPVDMHVDESDRREDFTLPFVIEAARERRVPNVTVAHISSLSVQTDDVARSTIAALADADVNVVV
NPIIVKITRLSELLDAGVSVMFGSDNLRDPFYPLGAANPLGSAIFACQIAALGTPQDLRRVFDAVTINAA
RMLGFPSLLGVVEGAVADLAVFPSATPEEVVLDQQSPLFVLKGGRVVAMRLAAGSTSFRDYS

Nucleotide sequence (1239 bp)

>gi|12644694:11082-12320 Acidovorax avenae subsp. citrulli s-triazine ring-cleavage gene region 
ATGTCAATGGAAACCCATAGTTATGTAGACGTCGCAATTCGTAACGCGCGTCTTGCCGATACGGAGGGAA 
TTGTCGATATTCTTATTCACGATGGGCGCATTGCGTCCATCGTGAAGTCGACAAAAACAAAAGGATCGGT 
GGAGATCGATGCTCATGAGGGTCTGGTCACTTCCGGCCTGGTAGAGCCTCACATCCATCTCGATAAGGCC 
CTGACGGCAGATCGGGTTCCCGCAGGAAGCATTGGCGACCTTCGAACGCGACGAGGCCTTGAGATGGCAA 
TTCGGGCCACCCGTGATATCAAGCGTACGTTCACGGTTGAAGATGTTCGAGAACGGGCCATACGTGCGGC 
CCTGATGGCATCCCGTGCGGGAACCACCGCATTGCGGACACACGTCGATGTCGACCCGATTGTCGGCCTC 
GCAGGTATCCGTGGTGTCCTTGAGGCGCGTGAAGTCTGCGCGGGATTGATCGATATCCAGATCGTCGCCT 
TCCCTCAGGAGGGACTCTTCTGCTCTGCGGGGGCCGTGGACCTCATGCGGGAGGCGATCAAACTGGGCGC 
GGATGCCGTCGGCGGCGCACCCGCGCTGGATGATCGCCCGCAGGACCATGTCCGAGCCGTTTTTGACCTT 
GCTGCTGAGTTCGGCCTGCCCGTAGACATGCACGTCGATGAGTCCGACCGGCGGGAAGACTTTACGCTTC 
CCTTTGTGATTGAAGCTGCCCGTGAACGGCGTGTGCCCAATGTGACCGTCGCGCACATCAGCTCGCTGTC 
CGTACAGACGGATGACGTAGCACGGTCGACCATTGCCGCCCTTGCGGACGCCGATGTTAATGTCGTGGTT 
AATCCGATCATTGTCAAAATTACGCGGCTGAGTGAATTACTCGATGCCGGAGTCTCCGTAATGTTTGGCT 
CGGACAACCTGCGGGATCCGTTCTATCCGCTCGGAGCGGCGAATCCCCTTGGATCAGCCATTTTTGCCTG 
TCAAATTGCCGCGCTGGGAACACCGCAAGATCTCAGACGGGTATTCGATGCGGTCACCATCAACGCTGCC 
CGCATGCTGGGATTCCCCTCACTTTTAGGCGTCGTGGAAGGGGCAGTCGCGGATCTCGCAGTATTCCCAT 
CGGCGACGCCCGAGGAGGTTGTTCTGGATCAACAGTCTCCGCTCTTCGTACTCAAGGGCGGACGTGTCGT 
TGCCATGCGATTGGCCGCTGGATCAACGTCGTTCCGCGACTACTCATGA

Cyanurate degradation pathway

Cyanuric acid amidohydrolase (Acidovorax avenae subsp. citrulli)

Protein sequence

>gi|3659839|gb|AAC61577.1| cyanuric acid amidohydrolase [Acidovorax avenae subsp. citrulli]
MQAQVFRVPMSNPADVSGVAKLIDEGVIRAEEVVCVLGKTEGNGCVNDFTRGYTTLAFKVYFSEKLGVSR
QEVGERIAFIMSGGTEGVMAPHCTIFTVQKTDNKQKTAAEGKRLAVQQIFTREFLPEEIGRMPQVTETAD
AVRRAMREAGIADASDVHFVQVKCPLLTAGRMHDAVERGHTVATEDTYESMGYSRGASALGIALALGEVE
KANLSDEVITADYSLYSSVASTSAGIELMNNEIIVMGNSRAWGGDLVIGHAEMKDAIDGAAVRQALRDVG
CCENDLPTVDELGRVVNVFAKAEASPDGEVRNRRHTMLDDSDINSTRHARAVVNAVIASIVGDPMVYVSG
GSEHQGPAGGGPVAVIARTA

Nucleotide sequence (1113 bp)

>gi|12644694:8966-10078 Acidovorax avenae subsp. citrulli s-triazine ring-cleavage gene region 
ATGCAAGCGCAAGTTTTTCGAGTTCCAATGAGTAATCCAGCCGATGTTAGTGGCGTAGCCAAGCTCATCG 
ATGAGGGAGTGATCCGTGCCGAAGAGGTCGTCTGCGTTCTCGGCAAGACCGAAGGCAACGGCTGTGTCAA 
TGACTTCACGCGTGGCTACACCACCCTCGCGTTCAAGGTCTACTTCTCCGAGAAACTGGGCGTGTCCCGG 
CAAGAGGTCGGCGAGCGCATCGCTTTCATCATGTCCGGCGGTACCGAAGGCGTCATGGCGCCTCACTGCA 
CCATCTTCACCGTGCAGAAGACGGACAACAAGCAGAAGACCGCCGCTGAAGGCAAGCGACTTGCCGTTCA 
GCAGATCTTTACCCGCGAGTTCCTGCCGGAGGAGATCGGCCGCATGCCGCAGGTCACGGAAACAGCCGAC 
GCTGTTCGCCGCGCCATGCGCGAAGCCGGCATCGCGGATGCATCCGATGTCCACTTCGTTCAGGTCAAGT 
GCCCACTGCTCACTGCCGGCCGCATGCATGACGCTGTCGAGCGCGGGCATACGGTTGCCACCGAAGATAC 
CTATGAGTCCATGGGCTACTCCCGCGGCGCATCCGCGCTTGGTATCGCCCTGGCCCTCGGGGAAGTCGAG 
AAGGCCAACCTCAGTGATGAAGTTATTACCGCAGACTACAGTCTCTACTCCTCGGTTGCCTCAACTTCGG 
CGGGTATCGAGTTGATGAACAACGAGATCATCGTCATGGGCAACAGCCGCGCATGGGGTGGTGACCTCGT 
CATCGGCCACGCCGAGATGAAGGACGCCATCGACGGTGCAGCGGTCCGGCAGGCCCTGCGCGACGTCGGG 
TGCTGCGAGAACGACCTGCCGACCGTCGACGAGCTCGGCCGCGTGGTCAATGTATTTGCCAAGGCTGAAG 
CCTCCCCGGACGGTGAGGTTCGTAACCGCCGCCACACGATGCTGGACGATTCGGACATTAACAGCACGCG 
CCATGCGCGAGCGGTCGTCAATGCAGTTATCGCTTCGATCGTGGGAGATCCCATGGTTTATGTCTCCGGC 
GGCTCCGAGCATCAGGGCCCCGCCGGTGGCGGTCCCGTTGCAGTTATCGCGCGCACAGCTTAA
Retrieved from "https://openwetware.org/mediawiki/index.php?title=Melaminometer_Specific_Sequences&oldid=252665"